STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Athe_2671PFAM: protein of unknown function DUF955; KEGG: csc:Csac_2641 hypothetical protein. (255 aa)    
Predicted Functional Partners:
Athe_2670
KEGG: csc:Csac_1410 hypothetical protein.
 
    0.950
Athe_2672
Transcriptional regulator, XRE family; PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein; KEGG: tte:TTE2046 transcriptional regulator.
 
  
 0.897
Athe_2465
KEGG: csc:Csac_1410 hypothetical protein.
 
    0.787
Athe_2467
Transcriptional regulator, XRE family; PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein; KEGG: csc:Csac_1408 XRE family transcriptional regulator.
 
  
 0.731
Athe_0095
PFAM: protein of unknown function DUF955; KEGG: csc:Csac_2536 helix-turn-helix domain-containing protein.
 
  
 0.552
Athe_2669
KEGG: csc:Csac_2639 hypothetical protein.
       0.414
Your Current Organism:
Caldicellulosiruptor bescii
NCBI taxonomy Id: 521460
Other names: Anaerocellum thermophilum DSM 6725, C. bescii DSM 6725, Caldicellulosiruptor becscii str. DSM 6725, Caldicellulosiruptor bescii DSM 6725, Caldicellulosiruptor bescii strain DSM 6725
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.