STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Plim_0005PFAM: nucleic acid binding OB-fold tRNA/helicase- type; KEGG: GA27442 gene product from transcript GA27442- RA. (377 aa)    
Predicted Functional Partners:
Plim_2082
KEGG: Hypothetical protein CBG02561.
  
     0.725
Plim_2530
PFAM: Ankyrin; SMART: Ankyrin; KEGG: hypothetical protein.
  
     0.621
Plim_3844
Scramblase family protein.
  
     0.582
Plim_0937
PFAM: YTV domain protein; KEGG: hypothetical protein LOC680468.
  
     0.574
Plim_0003
PFAM: response regulator receiver; transcriptional regulator domain protein; SMART: response regulator receiver; KEGG: swi:Swit_3444 two component transcriptional regulator.
       0.559
Plim_0004
Hypothetical protein.
       0.559
Plim_0620
Hypothetical protein; KEGG: mxa:MXAN_4062 leucine-rich repeat domain protein.
  
     0.513
Plim_1736
PFAM: Calcium/calmodulin dependent protein kinase II association-domain protein; KEGG: hypothetical protein.
  
     0.502
Plim_0002
ATP-binding region ATPase domain protein; KEGG: gme:Gmet_3382 heavy metal sensor signal transduction histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; histidine kinase HAMP region domain protein.
       0.448
Your Current Organism:
Planctopirus limnophila
NCBI taxonomy Id: 521674
Other names: P. limnophila DSM 3776, Planctomyces limnophilus ATCC 43296, Planctomyces limnophilus DSM 3776, Planctomyces limnophilus str. DSM 3776, Planctomyces limnophilus strain DSM 3776, Planctopirus limnophila DSM 3776, Planctopirus limnophilus DSM 3776
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.