Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
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[Homology]
Score
Plim_0016PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; histidine kinase HAMP region domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; KEGG: bid:Bind_2997 integral membrane sensor signal transduction histidine kinase. (489 aa)    
Predicted Functional Partners:
Plim_2762
PAS sensor protein.
 
 
 
 0.739
Plim_2937
Sigma-54 factor interaction domain-containing protein.
 
 
 
 0.732
Plim_3061
ATP-binding region ATPase domain protein.
 
 
 
 0.694
Plim_2545
PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: sfu:Sfum_1502 signal transduction histidine kinase, nitrogen specific, NtrB.
  
 
   0.670
Plim_2084
PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; response regulator receiver; ATPase associated with various cellular activities AAA_5; magnesium chelatase ChlI subunit; SMART: response regulator receiver; AAA ATPase; KEGG: afw:Anae109_2258 two component, sigma54 specific, fis family transcriptional regulator.
 
 
 
 0.646
Plim_0716
PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; response regulator receiver; ATPase associated with various cellular activities AAA_5; SMART: response regulator receiver; AAA ATPase; KEGG: dvu:DVU0110 sigma-54 dependent transcriptional regulator/response regulator.
 
 
 
 0.640
Plim_1915
PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; response regulator receiver; ATPase associated with various cellular activities AAA_5; SMART: response regulator receiver; AAA ATPase; KEGG: dal:Dalk_0661 two component, sigma54 specific, transcriptional regulator, Fis family.
 
 
 
 0.638
Plim_1639
PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; response regulator receiver; ATPase associated with various cellular activities AAA_5; SMART: response regulator receiver; AAA ATPase; KEGG: ade:Adeh_1555 two component, sigma54 specific, fis family transcriptional regulator.
 
 
 
 0.630
Plim_2544
KEGG: dal:Dalk_2555 response regulator receiver protein; TIGRFAM: DNA binding domain protein, excisionase family; PFAM: response regulator receiver; SMART: response regulator receiver.
  
 
 
 0.610
Plim_0701
PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; response regulator receiver; SMART: response regulator receiver; AAA ATPase; KEGG: dal:Dalk_0340 two component, sigma54 specific, transcriptional regulator, Fis family.
 
 
 
 0.604
Your Current Organism:
Planctopirus limnophila
NCBI taxonomy Id: 521674
Other names: P. limnophila DSM 3776, Planctomyces limnophilus ATCC 43296, Planctomyces limnophilus DSM 3776, Planctomyces limnophilus str. DSM 3776, Planctomyces limnophilus strain DSM 3776, Planctopirus limnophila DSM 3776, Planctopirus limnophilus DSM 3776
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