STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Plim_0018PFAM: protein of unknown function DUF1080; KEGG: swd:Swoo_0366 hypothetical protein. (249 aa)    
Predicted Functional Partners:
Plim_0111
PFAM: oxidoreductase domain protein; KEGG: sus:Acid_1336 putative streptomycin biosynthesis protein StrI.
  
     0.759
Plim_1564
TIGRFAM: membrane-bound dehydrogenase domain protein; heme-binding protein; KEGG: gsu:GSU0193 L-sorbosone dehydrogenase, putative.
  
     0.759
Plim_1436
Heme-binding protein; KEGG: cti:RALTA_B2024 conserved hypothetical protein, PBS lyase heat-like repeat; TIGRFAM: heme-binding protein; PFAM: PBS lyase HEAT domain protein repeat- containing protein; SMART: PBS lyase HEAT domain protein repeat- containing protein.
  
     0.749
Plim_0623
PFAM: beta-lactamase domain protein; KEGG: sus:Acid_5491 beta-lactamase domain- containing protein.
  
     0.728
Plim_3929
FG-GAP repeat protein.
  
     0.728
Plim_1153
TIGRFAM: membrane-bound dehydrogenase domain protein; heme-binding protein; KEGG: sus:Acid_3123 putative heme-binding protein.
  
     0.727
Plim_2734
Membrane-bound dehydrogenase domain protein.
  
     0.714
Plim_0666
TIGRFAM: membrane-bound dehydrogenase domain protein; heme-binding protein; KEGG: mfa:Mfla_1033 L-sorbosone dehydrogenase, putative.
  
     0.711
Plim_1975
KEGG: sus:Acid_1705 signal peptide and transmembrane prediction.
  
     0.692
Plim_3330
Major facilitator superfamily MFS_1.
  
     0.691
Your Current Organism:
Planctopirus limnophila
NCBI taxonomy Id: 521674
Other names: P. limnophila DSM 3776, Planctomyces limnophilus ATCC 43296, Planctomyces limnophilus DSM 3776, Planctomyces limnophilus str. DSM 3776, Planctomyces limnophilus strain DSM 3776, Planctopirus limnophila DSM 3776, Planctopirus limnophilus DSM 3776
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