Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
Experiments
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[Homology]
Score
Plim_0023PFAM: cytochrome c assembly protein; KEGG: acp:A2cp1_1853 cytochrome c assembly protein. (1211 aa)    
Predicted Functional Partners:
Plim_1555
TIGRFAM: uroporphyrin-III C-methyltransferase; PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; Uroporphyrinogen III synthase HEM4; KEGG: dps:DP1734 uroporphyrinogen III synthase/methyltransferase (HemD+CobA).
  
  
 0.906
Plim_0641
KEGG: SNF2 superfamily protein; Belongs to the bacterial secretin family.
  
     0.613
Plim_2288
PFAM: Uroporphyrinogen III synthase HEM4; KEGG: sus:Acid_0761 uroporphyrinogen III synthase HEM4.
  
    0.575
Plim_1245
PFAM: DEAD/DEAH box helicase domain protein; helicase domain protein; type III restriction protein res subunit; SMART: DEAD-like helicase; helicase domain protein; KEGG: afw:Anae109_3468 DEAD/DEAH box helicase domain-containing protein.
  
     0.570
hemA
glutamyl-tRNA reductase; Catalyzes the NADPH-dependent reduction of glutamyl-tRNA(Glu) to glutamate 1-semialdehyde (GSA).
 
  
 0.550
Plim_0022
KEGG: acp:A2cp1_1851 hypothetical protein.
       0.541
Plim_3151
Protein of unknown function DUF303 acetylesterase putative; KEGG: proteophosphoglycan 5.
  
     0.521
Plim_0058
KEGG: mxa:MXAN_5780 putative efflux ABC transporter, permease protein PilI.
  
     0.511
Plim_3312
4Fe-4S ferredoxin iron-sulfur binding domain protein.
 
     0.492
Plim_2956
Uncharacterized protein required for cytochrome oxidase assembly-like protein.
  
  
 0.489
Your Current Organism:
Planctopirus limnophila
NCBI taxonomy Id: 521674
Other names: P. limnophila DSM 3776, Planctomyces limnophilus ATCC 43296, Planctomyces limnophilus DSM 3776, Planctomyces limnophilus str. DSM 3776, Planctomyces limnophilus strain DSM 3776, Planctopirus limnophila DSM 3776, Planctopirus limnophilus DSM 3776
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