Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Plim_0027PFAM: protein of unknown function DUF1559; KEGG: sus:Acid_5705 Tfp pilus assembly protein PilE- like protein. (331 aa)    
Predicted Functional Partners:
Plim_0406
Hypothetical protein; KEGG: gme:Gmet_3367 general secretion pathway protein G.
  
     0.735
Plim_0076
TIGRFAM: type IV pilus assembly protein PilM; KEGG: afw:Anae109_0686 type IV pilus assembly protein PilM.
  
     0.626
Plim_3249
Hypothetical protein.
  
     0.605
Plim_0028
Hypothetical protein.
       0.536
Plim_0026
PFAM: Di-haem cytochrome c peroxidase; KEGG: pfl:PFL_3613 di-haem cytochrome c peroxidase family protein.
       0.532
Plim_0723
Hypothetical protein.
  
     0.516
rpmB
TIGRFAM: ribosomal protein L28; KEGG: dvu:DVU1211 50S ribosomal protein L28; Belongs to the bacterial ribosomal protein bL28 family.
  
     0.479
Plim_1826
PFAM: protein of unknown function DUF1549; KEGG: sus:Acid_5039 hypothetical protein.
  
     0.462
Plim_3001
Von Willebrand factor type A.
  
     0.461
Plim_3639
Type II secretory pathway component PulK-like protein; KEGG: hypothetical protein.
  
   0.459
Your Current Organism:
Planctopirus limnophila
NCBI taxonomy Id: 521674
Other names: P. limnophila DSM 3776, Planctomyces limnophilus ATCC 43296, Planctomyces limnophilus DSM 3776, Planctomyces limnophilus str. DSM 3776, Planctomyces limnophilus strain DSM 3776, Planctopirus limnophila DSM 3776, Planctopirus limnophilus DSM 3776
Server load: medium (50%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.