Plim_0029 protein (Planctopirus limnophila) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

Plim_0029

KEGG: sus:Acid_3123 putative heme-binding protein; TIGRFAM: membrane-bound dehydrogenase domain protein; heme-binding protein; PFAM: Glycosyl hydrolase family 98 putative carbohydrate binding module; SMART: Glycosyl hydrolase family 98 putative carbohydrate binding module. (1201 aa)

Predicted Functional Partners:

Plim_0627

0.924

Plim_1439

0.770

Plim_1580

0.769

Plim_2802

0.758

Plim_1785

0.692

Plim_0665

0.666

Plim_2940

0.658

Plim_2385

0.646

Plim_3702

0.644

Plim_0089

0.631

Your Current Organism:

Planctopirus limnophila

NCBI taxonomy Id: 521674
Other names: P. limnophila DSM 3776, Planctomyces limnophilus ATCC 43296, Planctomyces limnophilus DSM 3776, Planctomyces limnophilus str. DSM 3776, Planctomyces limnophilus strain DSM 3776, Planctopirus limnophila DSM 3776, Planctopirus limnophilus DSM 3776

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
Plim_0029	Plim_0089	KEGG: sus:Acid_3123 putative heme-binding protein; TIGRFAM: membrane-bound dehydrogenase domain protein; heme-binding protein; PFAM: Glycosyl hydrolase family 98 putative carbohydrate binding module; SMART: Glycosyl hydrolase family 98 putative carbohydrate binding module.	PFAM: NIPSNAP family containing protein; KEGG: sus:Acid_3876 NIPSNAP family protein.	0.631
Plim_0029	Plim_0627	KEGG: sus:Acid_3123 putative heme-binding protein; TIGRFAM: membrane-bound dehydrogenase domain protein; heme-binding protein; PFAM: Glycosyl hydrolase family 98 putative carbohydrate binding module; SMART: Glycosyl hydrolase family 98 putative carbohydrate binding module.	PFAM: protein of unknown function DUF1080; KEGG: sus:Acid_7742 hypothetical protein.	0.924
Plim_0029	Plim_0665	KEGG: sus:Acid_3123 putative heme-binding protein; TIGRFAM: membrane-bound dehydrogenase domain protein; heme-binding protein; PFAM: Glycosyl hydrolase family 98 putative carbohydrate binding module; SMART: Glycosyl hydrolase family 98 putative carbohydrate binding module.	Hypothetical protein; KEGG: pen:PSEEN1886 arylesterase.	0.666
Plim_0029	Plim_1439	KEGG: sus:Acid_3123 putative heme-binding protein; TIGRFAM: membrane-bound dehydrogenase domain protein; heme-binding protein; PFAM: Glycosyl hydrolase family 98 putative carbohydrate binding module; SMART: Glycosyl hydrolase family 98 putative carbohydrate binding module.	Hypothetical protein; KEGG: rme:Rmet_0747 putative membrane-bound dehydrogenase oxidoreductase protein.	0.770
Plim_0029	Plim_1580	KEGG: sus:Acid_3123 putative heme-binding protein; TIGRFAM: membrane-bound dehydrogenase domain protein; heme-binding protein; PFAM: Glycosyl hydrolase family 98 putative carbohydrate binding module; SMART: Glycosyl hydrolase family 98 putative carbohydrate binding module.	Large, multifunctional secreted protein.	0.769
Plim_0029	Plim_1785	KEGG: sus:Acid_3123 putative heme-binding protein; TIGRFAM: membrane-bound dehydrogenase domain protein; heme-binding protein; PFAM: Glycosyl hydrolase family 98 putative carbohydrate binding module; SMART: Glycosyl hydrolase family 98 putative carbohydrate binding module.	PFAM: FG-GAP repeat protein; KEGG: sus:Acid_7682 FG-GAP repeat-containing protein.	0.692
Plim_0029	Plim_2385	KEGG: sus:Acid_3123 putative heme-binding protein; TIGRFAM: membrane-bound dehydrogenase domain protein; heme-binding protein; PFAM: Glycosyl hydrolase family 98 putative carbohydrate binding module; SMART: Glycosyl hydrolase family 98 putative carbohydrate binding module.	PFAM: protein of unknown function DUF1080; KEGG: sus:Acid_7742 hypothetical protein.	0.646
Plim_0029	Plim_2802	KEGG: sus:Acid_3123 putative heme-binding protein; TIGRFAM: membrane-bound dehydrogenase domain protein; heme-binding protein; PFAM: Glycosyl hydrolase family 98 putative carbohydrate binding module; SMART: Glycosyl hydrolase family 98 putative carbohydrate binding module.	Oxidoreductase domain protein.	0.758
Plim_0029	Plim_2940	KEGG: sus:Acid_3123 putative heme-binding protein; TIGRFAM: membrane-bound dehydrogenase domain protein; heme-binding protein; PFAM: Glycosyl hydrolase family 98 putative carbohydrate binding module; SMART: Glycosyl hydrolase family 98 putative carbohydrate binding module.	Protein of unknown function DUF1080.	0.658
Plim_0029	Plim_3702	KEGG: sus:Acid_3123 putative heme-binding protein; TIGRFAM: membrane-bound dehydrogenase domain protein; heme-binding protein; PFAM: Glycosyl hydrolase family 98 putative carbohydrate binding module; SMART: Glycosyl hydrolase family 98 putative carbohydrate binding module.	Xylose isomerase domain protein TIM barrel.	0.644
Plim_0089	Plim_0029	PFAM: NIPSNAP family containing protein; KEGG: sus:Acid_3876 NIPSNAP family protein.	KEGG: sus:Acid_3123 putative heme-binding protein; TIGRFAM: membrane-bound dehydrogenase domain protein; heme-binding protein; PFAM: Glycosyl hydrolase family 98 putative carbohydrate binding module; SMART: Glycosyl hydrolase family 98 putative carbohydrate binding module.	0.631
Plim_0089	Plim_1785	PFAM: NIPSNAP family containing protein; KEGG: sus:Acid_3876 NIPSNAP family protein.	PFAM: FG-GAP repeat protein; KEGG: sus:Acid_7682 FG-GAP repeat-containing protein.	0.488
Plim_0089	Plim_2940	PFAM: NIPSNAP family containing protein; KEGG: sus:Acid_3876 NIPSNAP family protein.	Protein of unknown function DUF1080.	0.427
Plim_0627	Plim_0029	PFAM: protein of unknown function DUF1080; KEGG: sus:Acid_7742 hypothetical protein.	KEGG: sus:Acid_3123 putative heme-binding protein; TIGRFAM: membrane-bound dehydrogenase domain protein; heme-binding protein; PFAM: Glycosyl hydrolase family 98 putative carbohydrate binding module; SMART: Glycosyl hydrolase family 98 putative carbohydrate binding module.	0.924
Plim_0627	Plim_1785	PFAM: protein of unknown function DUF1080; KEGG: sus:Acid_7742 hypothetical protein.	PFAM: FG-GAP repeat protein; KEGG: sus:Acid_7682 FG-GAP repeat-containing protein.	0.714
Plim_0665	Plim_0029	Hypothetical protein; KEGG: pen:PSEEN1886 arylesterase.	KEGG: sus:Acid_3123 putative heme-binding protein; TIGRFAM: membrane-bound dehydrogenase domain protein; heme-binding protein; PFAM: Glycosyl hydrolase family 98 putative carbohydrate binding module; SMART: Glycosyl hydrolase family 98 putative carbohydrate binding module.	0.666
Plim_0665	Plim_1439	Hypothetical protein; KEGG: pen:PSEEN1886 arylesterase.	Hypothetical protein; KEGG: rme:Rmet_0747 putative membrane-bound dehydrogenase oxidoreductase protein.	0.712
Plim_0665	Plim_1580	Hypothetical protein; KEGG: pen:PSEEN1886 arylesterase.	Large, multifunctional secreted protein.	0.691
Plim_0665	Plim_1785	Hypothetical protein; KEGG: pen:PSEEN1886 arylesterase.	PFAM: FG-GAP repeat protein; KEGG: sus:Acid_7682 FG-GAP repeat-containing protein.	0.739
Plim_0665	Plim_2385	Hypothetical protein; KEGG: pen:PSEEN1886 arylesterase.	PFAM: protein of unknown function DUF1080; KEGG: sus:Acid_7742 hypothetical protein.	0.619

page 1 of 4

Server load: low (20%) [HD]

Permalink

Network

Fusion

Experiments

Co-occurrence

Databases

Co-expression

Textmining

Neighborhood

© STRING Consortium 2026

Credits

Access

Info

About