Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
Plim_0030PFAM: protein of unknown function DUF164; KEGG: dol:Dole_2149 hypothetical protein. (237 aa)    
Predicted Functional Partners:
Plim_2674
Protein of unknown function DUF34; Belongs to the GTP cyclohydrolase I type 2/NIF3 family.
  
  
 0.630
Plim_1297
PFAM: cytochrome c assembly protein; KEGG: pca:Pcar_3065 cytochrome c biogenesis protein.
  
     0.540
lnt
Apolipoprotein N-acyltransferase; Catalyzes the phospholipid dependent N-acylation of the N- terminal cysteine of apolipoprotein, the last step in lipoprotein maturation; Belongs to the CN hydrolase family. Apolipoprotein N- acyltransferase subfamily.
  
     0.517
Plim_3331
PpiC-type peptidyl-prolyl cis-trans isomerase.
  
     0.513
rnhA
Ribonuclease H; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids.
  
  
 0.511
Plim_0090
Conserved hypothetical protein; KEGG: outer membrane efflux protein.
  
     0.457
Plim_2805
Outer membrane efflux protein.
  
     0.449
Plim_2365
TIGRFAM: outer membrane protein assembly complex, YaeT protein; PFAM: surface antigen (D15); surface antigen variable number repeat protein; KEGG: rty:RT0150 outer membrane protein Omp1.
  
     0.435
Plim_3001
Von Willebrand factor type A.
  
     0.434
Plim_0029
KEGG: sus:Acid_3123 putative heme-binding protein; TIGRFAM: membrane-bound dehydrogenase domain protein; heme-binding protein; PFAM: Glycosyl hydrolase family 98 putative carbohydrate binding module; SMART: Glycosyl hydrolase family 98 putative carbohydrate binding module.
       0.404
Your Current Organism:
Planctopirus limnophila
NCBI taxonomy Id: 521674
Other names: P. limnophila DSM 3776, Planctomyces limnophilus ATCC 43296, Planctomyces limnophilus DSM 3776, Planctomyces limnophilus str. DSM 3776, Planctomyces limnophilus strain DSM 3776, Planctopirus limnophila DSM 3776, Planctopirus limnophilus DSM 3776
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