STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Plim_0035PFAM: N-formylglutamate amidohydrolase; KEGG: hypothetical gene supported by CR386744. (308 aa)    
Predicted Functional Partners:
Plim_2039
PFAM: amidohydrolase; Amidohydrolase 3; KEGG: sbm:Shew185_2868 amidohydrolase.
 
  
 0.861
Plim_0508
TIGRFAM: RNA ligase, DRB0094 family; KEGG: hypothetical protein.
  
     0.744
Plim_2663
Hypothetical protein; KEGG: MUC2; mucin 2, oligomeric mucus/gel-forming; K10955 intestinal mucin-2.
  
     0.712
Plim_0568
PFAM: Protein of unknown function DUF1592; Protein of unknown function DUF1588; Protein of unknown function DUF1587; Planctomycete cytochrome C; Protein of unknown function DUF1595; protein of unknown function DUF1585; KEGG: sus:Acid_4307 hypothetical protein.
  
     0.695
Plim_0569
PFAM: protein of unknown function DUF1552; KEGG: sus:Acid_0842 hypothetical protein.
  
     0.689
Plim_1602
KEGG: dal:Dalk_2288 YD repeat protein.
  
     0.664
Plim_2817
Rhodanese domain protein.
 
     0.656
Plim_0034
Biotin apo-protein ligase-related protein; KEGG: hypothetical protein.
      0.621
Plim_0259
Hypothetical protein; KEGG: acp:A2cp1_0259 tetratricopeptide TPR_2 repeat protein.
  
     0.588
Plim_4033
Pyrrolo-quinoline quinone.
  
     0.581
Your Current Organism:
Planctopirus limnophila
NCBI taxonomy Id: 521674
Other names: P. limnophila DSM 3776, Planctomyces limnophilus ATCC 43296, Planctomyces limnophilus DSM 3776, Planctomyces limnophilus str. DSM 3776, Planctomyces limnophilus strain DSM 3776, Planctopirus limnophila DSM 3776, Planctopirus limnophilus DSM 3776
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