STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Plim_0048Integral membrane protein; KEGG: dal:Dalk_4262 cyclic nucleotide-binding protein. (788 aa)    
Predicted Functional Partners:
Plim_3319
Similar to plant photosystem II stability/assembly factor.
 
  
 0.515
Plim_3348
Hopanoid biosynthesis associated RND transporter like protein HpnN.
  
     0.506
Plim_1011
Hypothetical protein; KEGG: hne:HNE_2881 alpha/beta fold family hydrolase.
  
     0.502
Plim_2436
PFAM: O-antigen polymerase; KEGG: spe:Spro_4678 O-antigen polymerase.
  
     0.485
Plim_0937
PFAM: YTV domain protein; KEGG: hypothetical protein LOC680468.
  
     0.480
Plim_2203
KEGG: dal:Dalk_1262 ABC-type uncharacterized transport system involved in gliding motility, auxiliary component.
  
     0.458
Plim_1805
Hypothetical protein.
  
     0.437
Plim_2781
Hypothetical protein.
  
     0.426
Plim_2316
Hypothetical protein; KEGG: nmu:Nmul_A0278 glycosyl transferase family protein.
  
     0.422
Plim_3354
TPR repeat-containing protein.
  
     0.417
Your Current Organism:
Planctopirus limnophila
NCBI taxonomy Id: 521674
Other names: P. limnophila DSM 3776, Planctomyces limnophilus ATCC 43296, Planctomyces limnophilus DSM 3776, Planctomyces limnophilus str. DSM 3776, Planctomyces limnophilus strain DSM 3776, Planctopirus limnophila DSM 3776, Planctopirus limnophilus DSM 3776
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