STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Plim_0049TIGRFAM: DNA protecting protein DprA; PFAM: SMF family protein; KEGG: hha:Hhal_2324 DNA protecting protein DprA. (368 aa)    
Predicted Functional Partners:
Plim_2474
TIGRFAM: ComEC/Rec2-related protein; PFAM: ComEC/Rec2-related protein; beta-lactamase domain protein; KEGG: mxa:MXAN_2626 DNA internalization-related competence protein ComEC/Rec2.
 
  
 0.935
Plim_0159
Mg chelatase, subunit ChlI; KEGG: gsu:GSU0489 Mg chelatase-related protein; TIGRFAM: Mg chelatase, subunit ChlI; PFAM: magnesium chelatase ChlI subunit; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase.
 
 0.905
Plim_3203
Amidophosphoribosyltransferase family protein.
 
 
 0.856
topA
DNA topoisomerase I; Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA- (5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supe [...]
   
 0.835
Plim_3682
Flagellar basal body FlaE domain protein.
  
    0.757
Plim_1574
PFAM: peptidase A24A domain protein; KEGG: aba:Acid345_1591 Type 4 prepilin peptidase 1. Aspartic peptidase. MEROPS family A24A.
  
  
 0.712
Plim_1841
PFAM: peptidase A24A domain protein; KEGG: afr:AFE_0186 type IV pilus prepilin peptidase PilD.
  
  
 0.712
Plim_2271
PFAM: peptidase A24A prepilin type IV; KEGG: vvu:VV1_1623 type 4 prepilin-like proteins leader peptide processing enzyme.
  
  
 0.712
Plim_0460
PFAM: protein of unknown function UPF0102; NERD domain protein; KEGG: gsu:GSU0650 hypothetical protein; Belongs to the UPF0102 family.
 
  
 0.657
Plim_3159
Alkaline phosphatase.
  
    0.643
Your Current Organism:
Planctopirus limnophila
NCBI taxonomy Id: 521674
Other names: P. limnophila DSM 3776, Planctomyces limnophilus ATCC 43296, Planctomyces limnophilus DSM 3776, Planctomyces limnophilus str. DSM 3776, Planctomyces limnophilus strain DSM 3776, Planctopirus limnophila DSM 3776, Planctopirus limnophilus DSM 3776
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