STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Plim_0050KEGG: similar to Plekhb2-prov protein. (333 aa)    
Predicted Functional Partners:
Plim_2000
KEGG: glo:Glov_1382 hypothetical protein.
  
  
 0.853
Plim_0424
PFAM: Cytochrome b/b6 domain; KEGG: scl:sce0365 cytochrome b6.
    
   0.785
Plim_1999
KEGG: putative virion core protein (lumpy skin disease virus)-like protein.
  
  
 0.785
Plim_2957
Cytochrome-c oxidase; Belongs to the heme-copper respiratory oxidase family.
    
   0.733
Plim_3990
Cytochrome c oxidase, subunit I; Cytochrome c oxidase is the component of the respiratory chain that catalyzes the reduction of oxygen to water. Subunits 1-3 form the functional core of the enzyme complex. CO I is the catalytic subunit of the enzyme. Electrons originating in cytochrome c are transferred via the copper A center of subunit 2 and heme A of subunit 1 to the bimetallic center formed by heme A3 and copper B.
    
   0.733
Plim_3423
FAD dependent oxidoreductase.
    
   0.732
Plim_2958
Cytochrome c oxidase subunit II; Subunits I and II form the functional core of the enzyme complex. Electrons originating in cytochrome c are transferred via heme a and Cu(A) to the binuclear center formed by heme a3 and Cu(B).
    
   0.727
Plim_3989
Cytochrome c oxidase, subunit II.
    
   0.727
Plim_2954
Cytochrome c oxidase subunit III.
    
   0.584
Plim_3991
Cytochrome c oxidase subunit III.
    
   0.584
Your Current Organism:
Planctopirus limnophila
NCBI taxonomy Id: 521674
Other names: P. limnophila DSM 3776, Planctomyces limnophilus ATCC 43296, Planctomyces limnophilus DSM 3776, Planctomyces limnophilus str. DSM 3776, Planctomyces limnophilus strain DSM 3776, Planctopirus limnophila DSM 3776, Planctopirus limnophilus DSM 3776
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.