Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Plim_0058KEGG: mxa:MXAN_5780 putative efflux ABC transporter, permease protein PilI. (308 aa)    
Predicted Functional Partners:
Plim_3749
ABC transporter related protein; KEGG: scl:sce_pseudo_13 pseudogene.
 
 
 0.739
Plim_2824
Protein of unknown function DUF1559.
  
     0.709
Plim_2417
PFAM: protein of unknown function DUF1559; KEGG: bam:Bamb_1440 type II secretion system protein G.
  
     0.667
Plim_0076
TIGRFAM: type IV pilus assembly protein PilM; KEGG: afw:Anae109_0686 type IV pilus assembly protein PilM.
  
     0.660
Plim_0304
PFAM: protein of unknown function DUF1559; KEGG: sus:Acid_5705 Tfp pilus assembly protein PilE- like protein.
  
     0.652
Plim_3394
Protein of unknown function DUF1559.
  
     0.648
Plim_0406
Hypothetical protein; KEGG: gme:Gmet_3367 general secretion pathway protein G.
  
     0.637
Plim_0057
Hypothetical protein.
       0.581
Plim_2365
TIGRFAM: outer membrane protein assembly complex, YaeT protein; PFAM: surface antigen (D15); surface antigen variable number repeat protein; KEGG: rty:RT0150 outer membrane protein Omp1.
  
     0.575
Plim_1317
PFAM: Forkhead-associated protein; SMART: Forkhead-associated protein; KEGG: bte:BTH_I0513 FHA domain-containing protein.
  
     0.569
Your Current Organism:
Planctopirus limnophila
NCBI taxonomy Id: 521674
Other names: P. limnophila DSM 3776, Planctomyces limnophilus ATCC 43296, Planctomyces limnophilus DSM 3776, Planctomyces limnophilus str. DSM 3776, Planctomyces limnophilus strain DSM 3776, Planctopirus limnophila DSM 3776, Planctopirus limnophilus DSM 3776
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