Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Plim_0070Heme exporter protein CcmA; KEGG: bcr:BCAH187_A1915 ABC transporter, ATP- binding protein; TIGRFAM: heme exporter protein CcmA; PFAM: ABC transporter related; SMART: AAA ATPase. (337 aa)    
Predicted Functional Partners:
Plim_3482
ABC transporter related protein.
 
    
0.859
Plim_2308
PFAM: inner-membrane translocator; KEGG: ade:Adeh_4259 ABC branched-chain amino acid transporter, inner membrane subunit; Belongs to the binding-protein-dependent transport system permease family.
      0.847
Plim_4114
ABC-2 type transporter.
 
  
 0.767
Plim_0069
TIGRFAM: anion transporter; PFAM: sodium/sulphate symporter; Citrate transporter; KEGG: pca:Pcar_2073 Na/dicarboxylate cotransporter- like protein.
   
   0.589
Plim_2203
KEGG: dal:Dalk_1262 ABC-type uncharacterized transport system involved in gliding motility, auxiliary component.
  
 
 0.526
Plim_2519
PFAM: AAA ATPase central domain protein; KEGG: AAA family ATPase, putative.
  
 
   0.520
Plim_0215
PFAM: ABC-2 type transporter; KEGG: mxa:MXAN_5316 putative daunorubicin resistance ABC transporter, permease protein.
 
  
 0.504
Plim_0071
PFAM: phosphatidate cytidylyltransferase; KEGG: hypothetical protein.
       0.461
atpC
ATP synthase F1, epsilon subunit; Produces ATP from ADP in the presence of a proton gradient across the membrane.
   
   0.413
lolD-2
ABC transporter related protein; Part of the ABC transporter complex LolCDE involved in the translocation of mature outer membrane-directed lipoproteins, from the inner membrane to the periplasmic chaperone, LolA. Responsible for the formation of the LolA-lipoprotein complex in an ATP-dependent manner.
 
    
0.412
Your Current Organism:
Planctopirus limnophila
NCBI taxonomy Id: 521674
Other names: P. limnophila DSM 3776, Planctomyces limnophilus ATCC 43296, Planctomyces limnophilus DSM 3776, Planctomyces limnophilus str. DSM 3776, Planctomyces limnophilus strain DSM 3776, Planctopirus limnophila DSM 3776, Planctopirus limnophilus DSM 3776
Server load: low (24%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.