STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Plim_0089PFAM: NIPSNAP family containing protein; KEGG: sus:Acid_3876 NIPSNAP family protein. (184 aa)    
Predicted Functional Partners:
Plim_1707
KEGG: sus:Acid_4741 hypothetical protein.
  
     0.634
Plim_0029
KEGG: sus:Acid_3123 putative heme-binding protein; TIGRFAM: membrane-bound dehydrogenase domain protein; heme-binding protein; PFAM: Glycosyl hydrolase family 98 putative carbohydrate binding module; SMART: Glycosyl hydrolase family 98 putative carbohydrate binding module.
  
     0.631
Plim_2156
KEGG: sus:Acid_4453 transmembrane prediction; Belongs to the mandelate racemase/muconate lactonizing enzyme family.
  
     0.623
Plim_2315
Hypothetical protein.
   
    0.595
Plim_3929
FG-GAP repeat protein.
  
     0.589
Plim_1564
TIGRFAM: membrane-bound dehydrogenase domain protein; heme-binding protein; KEGG: gsu:GSU0193 L-sorbosone dehydrogenase, putative.
  
     0.572
Plim_2162
PFAM: SMP-30/Gluconolaconase/LRE domain protein; Arylesterase; putative esterase; KEGG: sus:Acid_3430 gluconolactonase.
  
     0.563
Plim_1975
KEGG: sus:Acid_1705 signal peptide and transmembrane prediction.
  
     0.538
Plim_3631
Xylose isomerase domain protein TIM barrel.
  
     0.517
Plim_1957
TIGRFAM: heme-binding protein; PFAM: coagulation factor 5/8 type domain protein; PBS lyase HEAT domain protein repeat-containing protein; KEGG: msl:Msil_0148 putative glucose/sorbosone dehydrogenase.
  
     0.503
Your Current Organism:
Planctopirus limnophila
NCBI taxonomy Id: 521674
Other names: P. limnophila DSM 3776, Planctomyces limnophilus ATCC 43296, Planctomyces limnophilus DSM 3776, Planctomyces limnophilus str. DSM 3776, Planctomyces limnophilus strain DSM 3776, Planctopirus limnophila DSM 3776, Planctopirus limnophilus DSM 3776
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