STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Plim_0100PFAM: protein of unknown function DUF214; KEGG: ade:Adeh_2042 hypothetical protein. (1193 aa)    
Predicted Functional Partners:
Plim_0221
SMART: Pyrrolo-quinoline quinone; KEGG: mmr:Mmar10_1202 pyrrolo-quinoline quinone.
  
     0.775
Plim_1848
PFAM: Pyrrolo-quinoline quinone; SMART: Pyrrolo-quinoline quinone; KEGG: nar:Saro_0944 pyrrolo-quinoline quinone.
  
     0.775
Plim_1978
Hypothetical protein; KEGG: msl:Msil_3733 pyrrolo-quinoline quinone.
  
     0.775
Plim_2376
SMART: Pyrrolo-quinoline quinone; KEGG: mag:amb1343 WD-40 repeat-containing protein.
  
     0.775
Plim_2733
Hypothetical protein.
  
     0.775
Plim_0250
SMART: Pyrrolo-quinoline quinone; KEGG: cps:CPS_4249 outer membrane protein assembly complex subunit YfgL.
  
     0.774
Plim_0598
PFAM: Pyrrolo-quinoline quinone; SMART: Pyrrolo-quinoline quinone; KEGG: son:SO_3309 outer membrane protein assembly complex subunit YfgL.
  
     0.774
Plim_0982
PFAM: Pyrrolo-quinoline quinone; SMART: Pyrrolo-quinoline quinone; KEGG: acr:Acry_1741 pyrrolo-quinoline quinone.
  
     0.774
Plim_1863
SMART: Pyrrolo-quinoline quinone; KEGG: pla:Plav_3493 pyrrolo-quinoline quinone.
  
     0.774
Plim_1930
WD40-like protein repeat-like protein; KEGG: maq:Maqu_1130 pyrrolo-quinoline quinone.
  
     0.774
Your Current Organism:
Planctopirus limnophila
NCBI taxonomy Id: 521674
Other names: P. limnophila DSM 3776, Planctomyces limnophilus ATCC 43296, Planctomyces limnophilus DSM 3776, Planctomyces limnophilus str. DSM 3776, Planctomyces limnophilus strain DSM 3776, Planctopirus limnophila DSM 3776, Planctopirus limnophilus DSM 3776
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