STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Plim_0123PFAM: ErfK/YbiS/YcfS/YnhG family protein; Peptidoglycan-binding LysM; SMART: Peptidoglycan-binding LysM; KEGG: bsu:BSU14040 hypothetical protein. (396 aa)    
Predicted Functional Partners:
Plim_1789
Peptidoglycan glycosyltransferase; PFAM: penicillin-binding protein transpeptidase; Penicillin-binding protein dimerisation domain; KEGG: gme:Gmet_0406 penicillin-binding protein, transpeptidase.
 
 
 
 0.574
Plim_2762
PAS sensor protein.
  
  
 0.537
Plim_2671
Cyanophycin synthetase.
     
 0.521
Plim_2672
Cyanophycin synthetase.
     
 0.521
Plim_2369
PFAM: AMP-dependent synthetase and ligase; phospholipid/glycerol acyltransferase; major facilitator superfamily MFS_1; SMART: phospholipid/glycerol acyltransferase; KEGG: aba:Acid345_4052 2-acyl-glycerophospho- ethanolamine acyltransferase.
  
  
 0.513
Plim_1055
PFAM: glycosyl transferase family 2; Methyltransferase type 12; Methyltransferase type 11; TPR repeat-containing protein; Methionine biosynthesis MetW protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: gbm:Gbem_3740 glycosyl transferase family 2.
     
 0.506
Plim_0012
PFAM: Mur ligase middle domain protein; cytoplasmic peptidoglycan synthetase domain protein; KEGG: afr:AFE_0205 UDP-N-acetylmuramate--alanine ligase.
     
 0.505
Plim_0122
KEGG: hch:HCH_04786 hypothetical protein.
       0.493
Plim_1811
PFAM: PDZ/DHR/GLGF domain protein; SMART: PDZ/DHR/GLGF domain protein; KEGG: mxa:MXAN_4330 periplasmic serine protease, DO/DeqQ family.
  
  
 0.491
murG
Undecaprenyl-PP-MurNAc-pentapeptide-UDPGlcNAc GlcNAc transferase; Cell wall formation. Catalyzes the transfer of a GlcNAc subunit on undecaprenyl-pyrophosphoryl-MurNAc-pentapeptide (lipid intermediate I) to form undecaprenyl-pyrophosphoryl-MurNAc- (pentapeptide)GlcNAc (lipid intermediate II); Belongs to the glycosyltransferase 28 family. MurG subfamily.
     
 0.490
Your Current Organism:
Planctopirus limnophila
NCBI taxonomy Id: 521674
Other names: P. limnophila DSM 3776, Planctomyces limnophilus ATCC 43296, Planctomyces limnophilus DSM 3776, Planctomyces limnophilus str. DSM 3776, Planctomyces limnophilus strain DSM 3776, Planctopirus limnophila DSM 3776, Planctopirus limnophilus DSM 3776
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