STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Plim_0133PFAM: histidine biosynthesis protein; KEGG: mno:Mnod_6008 histidine biosynthesis protein; Belongs to the HisA/HisF family. (281 aa)    
Predicted Functional Partners:
Plim_0257
TIGRFAM: H4MPT-linked C1 transfer pathway protein; PFAM: Hydantoinase/oxoprolinase; KEGG: met:M446_5788 H4MPT-linked C1 transfer pathway protein.
 
     0.806
Plim_2332
Uncharacterized aspartokinase uridylate kinase-like protein; KEGG: bph:Bphy_6500 aspartate/glutamate/uridylate kinase.
 
     0.806
Plim_0283
PFAM: protein of unknown function DUF201; KEGG: bph:Bphy_6502 hypothetical protein.
 
     0.802
Plim_1687
TIGRFAM: formylmethanofuran dehydrogenase subunit A; PFAM: Amidohydrolase 3; KEGG: noc:Noc_0024 DNA/RNA non-specific endonuclease.
 
   
 0.800
Plim_1421
PFAM: glutamate synthase alpha subunit domain protein; KEGG: msl:Msil_2403 formylmethanofuran dehydrogenase subunit C.
 
   
 0.799
Plim_2299
Formylmethanofuran dehydrogenase subunit B-like protein; KEGG: noc:Noc_0025 formylmethanofuran dehydrogenase.
 
   
 0.799
ffsA
Formylmethanofuran/tetrahydromethanopterin N- formyltransferase; Catalyzes the transfer of a formyl group from 5-formyl tetrahydromethanopterin (5-formyl-H(4)MPT) to methanofuran (MFR) so as to produce formylmethanofuran (formyl-MFR) and tetrahydromethanopterin (H(4)MPT); Belongs to the FTR family.
 
     0.796
Plim_1240
KEGG: mrd:Mrad2831_2723 hypothetical protein.
 
     0.791
Plim_2423
TIGRFAM: beta-ribofuranosylaminobenzene 5'- phosphate synthase family; PFAM: GHMP kinase; KEGG: bxe:Bxe_B2430 beta-ribofuranosylaminobenzene 5'-phosphate synthase.
 
     0.791
Plim_2022
PFAM: protein of unknown function DUF201; KEGG: lch:Lcho_3151 hypothetical protein.
 
     0.787
Your Current Organism:
Planctopirus limnophila
NCBI taxonomy Id: 521674
Other names: P. limnophila DSM 3776, Planctomyces limnophilus ATCC 43296, Planctomyces limnophilus DSM 3776, Planctomyces limnophilus str. DSM 3776, Planctomyces limnophilus strain DSM 3776, Planctopirus limnophila DSM 3776, Planctopirus limnophilus DSM 3776
Server load: low (16%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.