Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Plim_0149Trans-hexaprenyltranstransferase; PFAM: Polyprenyl synthetase; KEGG: csa:Csal_0473 trans- hexaprenyltranstransferase; Belongs to the FPP/GGPP synthase family. (338 aa)    
Predicted Functional Partners:
Plim_0265
Undecaprenyl diphosphate synthase; Catalyzes the condensation of isopentenyl diphosphate (IPP) with allylic pyrophosphates generating different type of terpenoids.
 
 
 0.965
Plim_2441
PFAM: Polyprenyl synthetase; KEGG: ppd:Ppro_2404 polyprenyl synthetase; Belongs to the FPP/GGPP synthase family.
  
  
 
0.919
Plim_2915
Protein of unknown function DUF116.
  
  
 
0.913
Plim_2244
PFAM: Squalene/phytoene synthase; KEGG: sus:Acid_1266 farnesyl-diphosphate farnesyltransferase.
  
 0.885
Plim_3757
4-hydroxybenzoate polyprenyltransferase; Belongs to the UbiA prenyltransferase family.
 
 
 0.843
xseB
Exodeoxyribonuclease VII, small subunit; Bidirectionally degrades single-stranded DNA into large acid- insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides; Belongs to the XseB family.
  
  
 0.455
menG
Ubiquinone/menaquinone biosynthesis methyltransferase; Methyltransferase required for the conversion of demethylmenaquinol (DMKH2) to menaquinol (MKH2).
  
 
   0.451
Plim_0150
KEGG: ppw:PputW619_1135 exonuclease of the beta- lactamase fold involved in RNA processing-like protein.
       0.449
rplO
Ribosomal protein L15; Binds to the 23S rRNA; Belongs to the universal ribosomal protein uL15 family.
  
    0.449
Plim_2245
TIGRFAM: squalene synthase HpnC; PFAM: Squalene/phytoene synthase; KEGG: aba:Acid345_1745 squalene/phytoene synthase.
  
 
 0.449
Your Current Organism:
Planctopirus limnophila
NCBI taxonomy Id: 521674
Other names: P. limnophila DSM 3776, Planctomyces limnophilus ATCC 43296, Planctomyces limnophilus DSM 3776, Planctomyces limnophilus str. DSM 3776, Planctomyces limnophilus strain DSM 3776, Planctopirus limnophila DSM 3776, Planctopirus limnophilus DSM 3776
Server load: low (40%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.