Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Plim_0154SMART: HTTM domain protein; KEGG: bba:Bd2937 hypothetical protein. (533 aa)    
Predicted Functional Partners:
Plim_3628
FG-GAP repeat protein.
  
     0.761
Plim_3766
Hypothetical protein.
  
     0.757
Plim_4071
Spermine synthase.
  
     0.755
Plim_0574
PFAM: Haemagluttinin repeat-containing protein; KEGG: dal:Dalk_0372 filamentous hemagglutinin family outer membrane protein.
 
    0.749
Plim_0394
KEGG: mno:Mnod_7207 hypothetical protein.
  
     0.746
Plim_1197
PFAM: conserved hypothetical protein; KEGG: saz:Sama_0503 hypothetical protein.
   
 
 0.739
Plim_2317
KEGG: net:Neut_1053 hypothetical protein.
  
   
 0.732
Plim_2201
KEGG: bja:blr0521 hypothetical protein.
  
     0.726
Plim_1372
KEGG: abo:ABO_0802 hypothetical protein.
  
     0.725
Plim_1336
Membrane protein-like protein.
  
     0.724
Your Current Organism:
Planctopirus limnophila
NCBI taxonomy Id: 521674
Other names: P. limnophila DSM 3776, Planctomyces limnophilus ATCC 43296, Planctomyces limnophilus DSM 3776, Planctomyces limnophilus str. DSM 3776, Planctomyces limnophilus strain DSM 3776, Planctopirus limnophila DSM 3776, Planctopirus limnophilus DSM 3776
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