STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Plim_0156PFAM: type II secretion system protein; KEGG: afw:Anae109_0728 general secretion pathway protein F. (402 aa)    
Predicted Functional Partners:
Plim_3389
Type II secretory pathway component PulF-like protein.
  
  
  0.953
Plim_3388
Type II secretion system protein.
  
  
 
0.920
Plim_4189
Type II secretion system protein E; KEGG: predicted gene, 100042430.
 
   0.892
Plim_0082
PFAM: type II secretion system protein E; KEGG: noc:Noc_2895 type II secretion system protein E.
  
   0.870
Plim_0408
PFAM: type II secretion system protein E; General secretory system II protein E domain protein; SMART: AAA ATPase; KEGG: mxa:MXAN_5788 type IV-A pilus assembly ATPase PilB.
  
   0.870
Plim_0410
PFAM: type II secretion system protein E; General secretory system II protein E domain protein; SMART: AAA ATPase; KEGG: scl:sce4467 type IV pilus biogenesis protein PilB.
  
   0.870
Plim_0426
PFAM: type II secretion system protein E; General secretory system II protein E domain protein; KEGG: gsu:GSU1491 type IV pilus biogenesis protein PilB.
  
   0.870
Plim_0753
PFAM: type II secretion system protein E; KEGG: sat:SYN_01549 general secretion pathway protein E.
  
   0.870
Plim_1369
PFAM: type II secretion system protein E; KEGG: type II secretion system protein E; K02454 general secretion pathway protein E.
  
   0.870
Plim_3387
Type II secretion system protein E.
  
   0.870
Your Current Organism:
Planctopirus limnophila
NCBI taxonomy Id: 521674
Other names: P. limnophila DSM 3776, Planctomyces limnophilus ATCC 43296, Planctomyces limnophilus DSM 3776, Planctomyces limnophilus str. DSM 3776, Planctomyces limnophilus strain DSM 3776, Planctopirus limnophila DSM 3776, Planctopirus limnophilus DSM 3776
Server load: low (20%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.