Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Plim_0167Hypothetical protein; KEGG: proteophosphoglycan ppg4. (497 aa)    
Predicted Functional Partners:
Plim_3452
Hypothetical protein.
  
     0.735
Plim_1274
KEGG: scl:sce4409 hypothetical protein.
  
     0.661
Plim_4194
Tetratricopeptide TPR_2 repeat protein.
  
     0.614
Plim_1970
PFAM: GCN5-related N-acetyltransferase; KEGG: aba:Acid345_4211 GCN5-related N- acetyltransferase.
  
     0.610
Plim_3656
Protein of unknown function DUF1559.
  
     0.593
Plim_3424
SCP-like extracellular.
  
     0.555
Plim_2432
TIGRFAM: adenylyl cyclase CyaB; PFAM: adenylate cyclase; KEGG: aha:AHA_2412 adenylate cyclase.
  
     0.514
Plim_1443
KEGG: scl:sce0916 hypothetical protein.
  
     0.510
Plim_4206
Xylose isomerase domain protein TIM barrel.
  
     0.479
Plim_2417
PFAM: protein of unknown function DUF1559; KEGG: bam:Bamb_1440 type II secretion system protein G.
  
     0.476
Your Current Organism:
Planctopirus limnophila
NCBI taxonomy Id: 521674
Other names: P. limnophila DSM 3776, Planctomyces limnophilus ATCC 43296, Planctomyces limnophilus DSM 3776, Planctomyces limnophilus str. DSM 3776, Planctomyces limnophilus strain DSM 3776, Planctopirus limnophila DSM 3776, Planctopirus limnophilus DSM 3776
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