Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Plim_0184KEGG: aeh:Mlg_2710 arsenite-activated ATPase ArsA; TIGRFAM: arsenite-activated ATPase ArsA; PFAM: Anion-transporting ATPase; SMART: AAA ATPase. (603 aa)    
Predicted Functional Partners:
Plim_0147
PFAM: Arsenical resistance operon trans-acting repressor ArsD; KEGG: sea:SeAg_B2122 arsenical resistance operon trans-acting repressor ArsD.
   
 0.974
pyrF
Orotidine 5'-phosphate decarboxylase; Belongs to the OMP decarboxylase family. Type 2 subfamily.
    
   0.813
Plim_2426
Isoleucine--tRNA ligase; KEGG: bcr:BCAH187_A2323 isoleucyl-tRNA synthetase.
    
   0.715
gmk
Guanylate kinase; Essential for recycling GMP and indirectly, cGMP.
    
   0.710
dapF
Diaminopimelate epimerase; Catalyzes the stereoinversion of LL-2,6-diaminoheptanedioate (L,L-DAP) to meso-diaminoheptanedioate (meso-DAP), a precursor of L- lysine and an essential component of the bacterial peptidoglycan.
       0.601
Plim_1896
PFAM: Protein-tyrosine phosphatase, low molecular weight; SMART: Protein-tyrosine phosphatase, low molecular weight; KEGG: aba:Acid345_2957 protein tyrosine phosphatase.
    
 0.599
Plim_1090
PFAM: AAA ATPase central domain protein; SMART: AAA ATPase; KEGG: ank:AnaeK_0302 AAA ATPase central domain protein.
   
 
 0.467
Plim_1844
PFAM: AAA ATPase central domain protein; SMART: AAA ATPase; KEGG: ade:Adeh_0291 AAA ATPase.
   
 
 0.467
Plim_3041
AAA ATPase central domain protein; KEGG: acp:A2cp1_1568 response regulator receiver protein.
   
 
 0.467
secY
Preprotein translocase, SecY subunit; The central subunit of the protein translocation channel SecYEG. Consists of two halves formed by TMs 1-5 and 6-10. These two domains form a lateral gate at the front which open onto the bilayer between TMs 2 and 7, and are clamped together by SecE at the back. The channel is closed by both a pore ring composed of hydrophobic SecY resides and a short helix (helix 2A) on the extracellular side of the membrane which forms a plug. The plug probably moves laterally to allow the channel to open. The ring and the pore may move independently.
    
 
 0.443
Your Current Organism:
Planctopirus limnophila
NCBI taxonomy Id: 521674
Other names: P. limnophila DSM 3776, Planctomyces limnophilus ATCC 43296, Planctomyces limnophilus DSM 3776, Planctomyces limnophilus str. DSM 3776, Planctomyces limnophilus strain DSM 3776, Planctopirus limnophila DSM 3776, Planctopirus limnophilus DSM 3776
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