Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
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from curated databases
textmining
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experimentally determined
co-expression
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gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Plim_0187ATPase; KEGG: rpi:Rpic_0439 ATPase. (339 aa)    
Predicted Functional Partners:
Plim_2897
parB-like partition protein; Belongs to the ParB family.
  
 
 0.789
Plim_3718
ParB domain protein nuclease.
  
 
 0.789
Plim_1481
PFAM: glycosyl transferase family 2; KEGG: sus:Acid_1399 glycosyl transferase family protein.
 
 
 0.576
Plim_2188
PFAM: Tetratricopeptide TPR_2 repeat protein; TPR repeat-containing protein; SMART: BRCT domain protein; Tetratricopeptide domain protein; KEGG: scl:sce3861 MerR family transcriptional regulator.
  
  
 0.567
Plim_1478
PFAM: glycosyl transferase family 2; KEGG: acp:A2cp1_0705 glycosyl transferase family 2.
  
 
 0.504
Plim_2839
Glycosyl transferase family 2.
  
 
 0.504
Plim_3877
Glycosyl transferase family 2; KEGG: hypothetical protein LOC100150481.
  
 
 0.504
ffh
Signal recognition particle protein; Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds to the hydrophobic signal sequence of the ribosome-nascent chain (RNC) as it emerges from the ribosomes. The SRP-RNC complex is then targeted to the cytoplasmic membrane where it interacts with the SRP receptor FtsY. Belongs to the GTP-binding SRP family. SRP54 subfamily.
   
    0.469
Plim_0188
SMART: helicase c2; DEAD-like helicase; KEGG: gme:Gmet_3167 helicase C2.
       0.436
Plim_1055
PFAM: glycosyl transferase family 2; Methyltransferase type 12; Methyltransferase type 11; TPR repeat-containing protein; Methionine biosynthesis MetW protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: gbm:Gbem_3740 glycosyl transferase family 2.
  
 
 0.420
Your Current Organism:
Planctopirus limnophila
NCBI taxonomy Id: 521674
Other names: P. limnophila DSM 3776, Planctomyces limnophilus ATCC 43296, Planctomyces limnophilus DSM 3776, Planctomyces limnophilus str. DSM 3776, Planctomyces limnophilus strain DSM 3776, Planctopirus limnophila DSM 3776, Planctopirus limnophilus DSM 3776
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