STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Plim_0200TIGRFAM: phage SPO1 DNA polymerase-related protein; PFAM: Uracil-DNA glycosylase superfamily; KEGG: tgr:Tgr7_2152 phage SPO1 DNA polymerase- related protein. (305 aa)    
Predicted Functional Partners:
Plim_1386
PFAM: Uracil-DNA glycosylase superfamily; KEGG: mxa:MXAN_3589 putative uracil-DNA glycosylase, family 4.
  
  
  0.921
Plim_0201
PFAM: major facilitator superfamily MFS_1; KEGG: gbm:Gbem_0302 AMP-dependent synthetase and ligase.
       0.773
gmk
Guanylate kinase; Essential for recycling GMP and indirectly, cGMP.
      0.646
Plim_0202
Hypothetical protein.
       0.561
Plim_2626
Single-strand binding protein.
  
 
   0.542
Plim_1236
PFAM: peptidase M22 glycoprotease; KEGG: pca:Pcar_1913 metal-dependent protease.
  
    0.488
Plim_0203
PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; KEGG: noc:Noc_0989 hypothetical protein.
       0.410
Your Current Organism:
Planctopirus limnophila
NCBI taxonomy Id: 521674
Other names: P. limnophila DSM 3776, Planctomyces limnophilus ATCC 43296, Planctomyces limnophilus DSM 3776, Planctomyces limnophilus str. DSM 3776, Planctomyces limnophilus strain DSM 3776, Planctopirus limnophila DSM 3776, Planctopirus limnophilus DSM 3776
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