STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Plim_0216PFAM: protein of unknown function DUF420; alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; electron transport protein SCO1/SenC; KEGG: sus:Acid_4378 hypothetical protein. (444 aa)    
Predicted Functional Partners:
Plim_2958
Cytochrome c oxidase subunit II; Subunits I and II form the functional core of the enzyme complex. Electrons originating in cytochrome c are transferred via heme a and Cu(A) to the binuclear center formed by heme a3 and Cu(B).
 
 
 0.936
Plim_3989
Cytochrome c oxidase, subunit II.
 
 0.935
Plim_2956
Uncharacterized protein required for cytochrome oxidase assembly-like protein.
 
 
 0.926
ctaB
Protoheme IX farnesyltransferase; Converts heme B (protoheme IX) to heme O by substitution of the vinyl group on carbon 2 of heme B porphyrin ring with a hydroxyethyl farnesyl side group.
 
  
 0.773
Plim_0215
PFAM: ABC-2 type transporter; KEGG: mxa:MXAN_5316 putative daunorubicin resistance ABC transporter, permease protein.
       0.639
Plim_2954
Cytochrome c oxidase subunit III.
 
  
 0.615
Plim_2957
Cytochrome-c oxidase; Belongs to the heme-copper respiratory oxidase family.
 
  
 0.599
Plim_3993
Cytochrome c oxidase subunit III.
 
  
 0.585
Plim_3991
Cytochrome c oxidase subunit III.
 
  
 0.572
Plim_2978
Iron-sulfur cluster assembly accessory protein; Belongs to the HesB/IscA family.
  
     0.544
Your Current Organism:
Planctopirus limnophila
NCBI taxonomy Id: 521674
Other names: P. limnophila DSM 3776, Planctomyces limnophilus ATCC 43296, Planctomyces limnophilus DSM 3776, Planctomyces limnophilus str. DSM 3776, Planctomyces limnophilus strain DSM 3776, Planctopirus limnophila DSM 3776, Planctopirus limnophilus DSM 3776
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.