STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Plim_0225KEGG: sde:Sde_3807 hypothetical protein. (260 aa)    
Predicted Functional Partners:
Plim_2063
PFAM: cell divisionFtsK/SpoIIIE; SMART: AAA ATPase; KEGG: ppw:PputW619_3408 cell divisionFtsK/SpoIIIE.
    
   0.582
Plim_2823
Hypothetical protein.
  
     0.529
Plim_0456
SMART: Parallel beta-helix repeat; KEGG: bmj:BMULJ_04389 outer membrane autotransporter barrel.
  
 
   0.501
Plim_2378
KEGG: hypothetical protein.
  
     0.493
Plim_0224
KEGG: dvl:Dvul_0052 TadE family protein.
       0.474
Plim_2411
PFAM: Ion transport 2 domain protein; KEGG: ppd:Ppro_0413 ion transport 2 domain- containing protein.
  
     0.444
Plim_1672
6-deoxyerythronolide-B synthase., (Acyl-carrier- protein) S-malonyltransferase; PFAM: Beta-ketoacyl synthase; peptidase C45 acyl- coenzyme A:6-aminopenicillanic acid acyl-transferase; Acyl transferase; KR domain protein; short-chain dehydrogenase/reductase SDR; KEGG: acp:A2cp1_4042 beta-ketoacyl synthase.
  
 
 0.443
Plim_3149
CRISPR-associated protein, GSU0053 family.
  
     0.443
Plim_3846
Parallel beta-helix repeat protein; KEGG: hypothetical protein LOC100134400.
  
 
   0.442
Plim_3694
Protein of unknown function DUF897.
  
     0.438
Your Current Organism:
Planctopirus limnophila
NCBI taxonomy Id: 521674
Other names: P. limnophila DSM 3776, Planctomyces limnophilus ATCC 43296, Planctomyces limnophilus DSM 3776, Planctomyces limnophilus str. DSM 3776, Planctomyces limnophilus strain DSM 3776, Planctopirus limnophila DSM 3776, Planctopirus limnophilus DSM 3776
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.