STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Plim_0256PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: mxa:MXAN_6475 ABC transporter, ATP-binding protein. (308 aa)    
Predicted Functional Partners:
Plim_0255
Hypothetical protein.
 
     0.762
Plim_2203
KEGG: dal:Dalk_1262 ABC-type uncharacterized transport system involved in gliding motility, auxiliary component.
 
 
 0.666
Plim_0257
TIGRFAM: H4MPT-linked C1 transfer pathway protein; PFAM: Hydantoinase/oxoprolinase; KEGG: met:M446_5788 H4MPT-linked C1 transfer pathway protein.
       0.625
Plim_3249
Hypothetical protein.
 
 
 0.623
Plim_4003
Protein of unknown function DUF1355.
  
     0.607
Plim_0823
PFAM: protein of unknown function DUF58; KEGG: scl:sce0474 hypothetical protein.
 
     0.583
Plim_0470
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: met:M446_0166 ABC transporter related.
 
    
0.534
Plim_0824
KEGG: scl:sce5903 hypothetical protein.
  
     0.508
Plim_1001
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: glo:Glov_0231 ABC transporter related.
  
     0.485
atpC
ATP synthase F1, epsilon subunit; Produces ATP from ADP in the presence of a proton gradient across the membrane.
   
   0.413
Your Current Organism:
Planctopirus limnophila
NCBI taxonomy Id: 521674
Other names: P. limnophila DSM 3776, Planctomyces limnophilus ATCC 43296, Planctomyces limnophilus DSM 3776, Planctomyces limnophilus str. DSM 3776, Planctomyces limnophilus strain DSM 3776, Planctopirus limnophila DSM 3776, Planctopirus limnophilus DSM 3776
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.