STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Plim_0259Hypothetical protein; KEGG: acp:A2cp1_0259 tetratricopeptide TPR_2 repeat protein. (403 aa)    
Predicted Functional Partners:
Plim_1359
Acyl-CoA dehydrogenase-like protein; KEGG: scl:sce3990 putative isovaleryl-CoA dehydrogenase protein.
  
 0.927
Plim_0258
SMART: Pyrrolo-quinoline quinone; KEGG: hne:HNE_0773 PQQ repeat-containing protein.
 
     0.898
Plim_3326
Aldehyde Dehydrogenase.
  
 0.751
Plim_3506
WD40-like protein repeat-like protein.
  
     0.742
Plim_0250
SMART: Pyrrolo-quinoline quinone; KEGG: cps:CPS_4249 outer membrane protein assembly complex subunit YfgL.
  
     0.730
Plim_2376
SMART: Pyrrolo-quinoline quinone; KEGG: mag:amb1343 WD-40 repeat-containing protein.
  
     0.716
Plim_1668
KEGG: ade:Adeh_2066 hypothetical protein.
  
     0.714
Plim_3941
Alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen.
  
     0.712
Plim_2527
Dipeptidyl aminopeptidase/acylaminoacyl- peptidase-like protein; KEGG: pmr:PMI1215 hypothetical protein.
  
     0.711
Plim_3329
Conserved hypothetical protein.
 
   
 0.710
Your Current Organism:
Planctopirus limnophila
NCBI taxonomy Id: 521674
Other names: P. limnophila DSM 3776, Planctomyces limnophilus ATCC 43296, Planctomyces limnophilus DSM 3776, Planctomyces limnophilus str. DSM 3776, Planctomyces limnophilus strain DSM 3776, Planctopirus limnophila DSM 3776, Planctopirus limnophilus DSM 3776
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.