STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Plim_0309KEGG: sus:Acid_1640 peptidase M14, carboxypeptidase A. (874 aa)    
Predicted Functional Partners:
Plim_0310
Hypothetical protein.
       0.668
Plim_2538
PFAM: peptidase S9B dipeptidylpeptidase IV domain protein; peptidase S9 prolyl oligopeptidase active site domain protein; KEGG: ilo:IL2328 dipeptidyl aminopeptidase.
  
     0.610
Plim_0192
PFAM: peptidase M14 carboxypeptidase A; SMART: peptidase M14 carboxypeptidase A; KEGG: spl:Spea_0137 peptidase M14 carboxypeptidase A.
  
     0.606
Plim_0915
PFAM: peptidase S9 prolyl oligopeptidase active site domain protein; KEGG: sus:Acid_2017 glutamyl peptidase.
  
     0.545
Plim_3167
Protein of unknown function DUF1080.
  
     0.539
Plim_3912
Peptidase S9 prolyl oligopeptidase active site domain protein.
  
     0.522
Plim_3612
Phage terminase-like protein protein large subunit-like protein.
  
     0.495
Plim_3545
Portal protein lambda.
  
     0.425
Plim_3779
Pectate lyase.
  
     0.418
Plim_1781
KEGG: pat:Patl_4270 putative Zn-dependent aminopeptidase.
  
   
 0.413
Your Current Organism:
Planctopirus limnophila
NCBI taxonomy Id: 521674
Other names: P. limnophila DSM 3776, Planctomyces limnophilus ATCC 43296, Planctomyces limnophilus DSM 3776, Planctomyces limnophilus str. DSM 3776, Planctomyces limnophilus strain DSM 3776, Planctopirus limnophila DSM 3776, Planctopirus limnophilus DSM 3776
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.