STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Plim_0319PFAM: major facilitator superfamily MFS_1; General substrate transporter; KEGG: sus:Acid_2635 major facilitator transporter. (474 aa)    
Predicted Functional Partners:
Plim_0320
Hypothetical protein.
       0.565
Plim_1449
KEGG: sus:Acid_5040 hypothetical protein.
  
     0.514
Plim_1450
PFAM: protein of unknown function DUF1549; KEGG: sus:Acid_5039 hypothetical protein.
  
     0.496
Plim_2663
Hypothetical protein; KEGG: MUC2; mucin 2, oligomeric mucus/gel-forming; K10955 intestinal mucin-2.
  
     0.466
Plim_0883
KEGG: sus:Acid_5331 hypothetical protein.
  
     0.449
Plim_1036
AmoP; SMART: AMOP; KEGG: dal:Dalk_2288 YD repeat protein.
  
     0.448
Plim_1707
KEGG: sus:Acid_4741 hypothetical protein.
  
     0.443
Plim_3972
Protein of unknown function DUF1501.
  
     0.441
Plim_1436
Heme-binding protein; KEGG: cti:RALTA_B2024 conserved hypothetical protein, PBS lyase heat-like repeat; TIGRFAM: heme-binding protein; PFAM: PBS lyase HEAT domain protein repeat- containing protein; SMART: PBS lyase HEAT domain protein repeat- containing protein.
  
     0.433
Plim_1602
KEGG: dal:Dalk_2288 YD repeat protein.
  
     0.430
Your Current Organism:
Planctopirus limnophila
NCBI taxonomy Id: 521674
Other names: P. limnophila DSM 3776, Planctomyces limnophilus ATCC 43296, Planctomyces limnophilus DSM 3776, Planctomyces limnophilus str. DSM 3776, Planctomyces limnophilus strain DSM 3776, Planctopirus limnophila DSM 3776, Planctopirus limnophilus DSM 3776
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.