Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
Plim_0322PFAM: protein of unknown function DUF820. (202 aa)    
Predicted Functional Partners:
Plim_1609
PFAM: protein of unknown function DUF820; KEGG: scl:sce6780 hypothetical protein.
  
     0.753
Plim_0734
PFAM: protein of unknown function DUF820; KEGG: mrd:Mrad2831_3531 hypothetical protein.
  
     0.742
Plim_3645
Helix-turn-helix domain protein.
  
     0.642
Plim_0099
PFAM: protein of unknown function DUF820; KEGG: scl:sce6780 hypothetical protein.
  
     0.559
Plim_2398
KEGG: mpt:Mpe_A2083 hypothetical protein.
  
     0.539
leuC
3-isopropylmalate dehydratase, large subunit; Catalyzes the isomerization between 2-isopropylmalate and 3- isopropylmalate, via the formation of 2-isopropylmaleate.
       0.531
Plim_0321
3-isopropylmalate dehydratase, small subunit; Catalyzes the isomerization between 2-isopropylmalate and 3- isopropylmalate, via the formation of 2-isopropylmaleate. Belongs to the LeuD family. LeuD type 1 subfamily.
       0.519
Plim_3438
Dipeptidyl aminopeptidase/acylaminoacyl- peptidase-like protein.
  
     0.496
Plim_2196
PFAM: Abortive infection protein; KEGG: predicted protein.
  
     0.473
Plim_2746
PBS lyase HEAT domain protein repeat-containing protein.
  
     0.471
Your Current Organism:
Planctopirus limnophila
NCBI taxonomy Id: 521674
Other names: P. limnophila DSM 3776, Planctomyces limnophilus ATCC 43296, Planctomyces limnophilus DSM 3776, Planctomyces limnophilus str. DSM 3776, Planctomyces limnophilus strain DSM 3776, Planctopirus limnophila DSM 3776, Planctopirus limnophilus DSM 3776
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