STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Plim_0353TIGRFAM: membrane-bound dehydrogenase domain protein; heme-binding protein; PFAM: blue (type 1) copper domain protein; KEGG: hypothetical protein. (1390 aa)    
Predicted Functional Partners:
Plim_1975
KEGG: sus:Acid_1705 signal peptide and transmembrane prediction.
     0.950
Plim_1785
PFAM: FG-GAP repeat protein; KEGG: sus:Acid_7682 FG-GAP repeat-containing protein.
  
 
   0.746
Plim_1120
PFAM: protein of unknown function DUF1549; KEGG: sus:Acid_3744 hypothetical protein.
  
   
 0.743
Plim_2932
Hypothetical protein.
  
    0.679
Plim_1121
PFAM: protein of unknown function DUF1501; KEGG: sus:Acid_3745 hypothetical protein.
  
     0.671
Plim_2802
Oxidoreductase domain protein.
  
     0.633
Plim_1439
Hypothetical protein; KEGG: rme:Rmet_0747 putative membrane-bound dehydrogenase oxidoreductase protein.
  
     0.628
Plim_1610
KEGG: rde:RD1_3874 hypothetical protein.
  
     0.610
Plim_1666
PFAM: isochorismatase hydrolase; KEGG: sus:Acid_1892 isochorismatase hydrolase.
 
     0.602
cheB
Protein-glutamate methylesterase; Involved in chemotaxis. Part of a chemotaxis signal transduction system that modulates chemotaxis in response to various stimuli. Catalyzes the demethylation of specific methylglutamate residues introduced into the chemoreceptors (methyl-accepting chemotaxis proteins or MCP) by CheR. Also mediates the irreversible deamidation of specific glutamine residues to glutamic acid. Belongs to the CheB family.
   
    0.590
Your Current Organism:
Planctopirus limnophila
NCBI taxonomy Id: 521674
Other names: P. limnophila DSM 3776, Planctomyces limnophilus ATCC 43296, Planctomyces limnophilus DSM 3776, Planctomyces limnophilus str. DSM 3776, Planctomyces limnophilus strain DSM 3776, Planctopirus limnophila DSM 3776, Planctopirus limnophilus DSM 3776
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