Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Plim_0362TIGRFAM: ribosomal subunit interface protein; PFAM: sigma 54 modulation protein/ribosomal protein S30EA; KEGG: dar:Daro_4148 SSU ribosomal protein S30P / sigma 54 modulation protein. (114 aa)    
Predicted Functional Partners:
rplU
Ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family.
  
   0.829
rpsI
Ribosomal protein S9; Belongs to the universal ribosomal protein uS9 family.
  
 
 0.827
rpmA
TIGRFAM: ribosomal protein L27; PFAM: ribosomal protein L27; KEGG: bbk:BARBAKC583_0310 50S ribosomal protein L27; Belongs to the bacterial ribosomal protein bL27 family.
    
 
 0.825
rpsF
Ribosomal protein S6; Binds together with S18 to 16S ribosomal RNA.
    
 
 0.824
rpsU
TIGRFAM: ribosomal protein S21; PFAM: ribosomal protein S21; KEGG: mxa:MXAN_5201 30S ribosomal protein S21; Belongs to the bacterial ribosomal protein bS21 family.
   
 
 0.822
rplI
Ribosomal protein L9; Binds to the 23S rRNA.
   
   0.814
rpmB
TIGRFAM: ribosomal protein L28; KEGG: dvu:DVU1211 50S ribosomal protein L28; Belongs to the bacterial ribosomal protein bL28 family.
  
   0.813
rpsE
Ribosomal protein S5; Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body. Belongs to the universal ribosomal protein uS5 family.
    
 
 0.812
rpmG
TIGRFAM: ribosomal protein L33; PFAM: ribosomal protein L33; KEGG: cju:C8J_0444 50S ribosomal protein L33; Belongs to the bacterial ribosomal protein bL33 family.
   
   0.811
rplY
Ribosomal 5S rRNA E-loop binding protein Ctc/L25/TL5; This is one of the proteins that binds to the 5S RNA in the ribosome where it forms part of the central protuberance. Belongs to the bacterial ribosomal protein bL25 family. CTC subfamily.
   
   0.811
Your Current Organism:
Planctopirus limnophila
NCBI taxonomy Id: 521674
Other names: P. limnophila DSM 3776, Planctomyces limnophilus ATCC 43296, Planctomyces limnophilus DSM 3776, Planctomyces limnophilus str. DSM 3776, Planctomyces limnophilus strain DSM 3776, Planctopirus limnophila DSM 3776, Planctopirus limnophilus DSM 3776
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