Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
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[Homology]
Score
Plim_0363PFAM: glucose sorbosone dehydrogenase; KEGG: hypothetical protein. (422 aa)    
Predicted Functional Partners:
Plim_1382
KEGG: ccs:CCNA_02102 glycosyl hydrolase.
 
      0.744
Plim_0129
PFAM: Protein of unknown function DUF1592; Protein of unknown function DUF1588; Protein of unknown function DUF1587; Protein of unknown function DUF1595; protein of unknown function DUF1585; KEGG: sus:Acid_5827 hypothetical protein.
 
      0.722
Plim_2110
PFAM: Glycosyl transferase, family 31; glycosyl transferase family 2; KEGG: similar to beta-1,3-galactosyltransferase-6; K00734 galactosylxylosylprotein 3-beta- galactosyltransferase.
  
     0.557
Plim_3928
Gluconolactonase.
 
     0.523
Plim_2381
PFAM: amine oxidase; FAD dependent oxidoreductase; KEGG: mxa:MXAN_4930 amine oxidase, flavin- containing.
  
     0.423
Plim_0362
TIGRFAM: ribosomal subunit interface protein; PFAM: sigma 54 modulation protein/ribosomal protein S30EA; KEGG: dar:Daro_4148 SSU ribosomal protein S30P / sigma 54 modulation protein.
       0.401
Your Current Organism:
Planctopirus limnophila
NCBI taxonomy Id: 521674
Other names: P. limnophila DSM 3776, Planctomyces limnophilus ATCC 43296, Planctomyces limnophilus DSM 3776, Planctomyces limnophilus str. DSM 3776, Planctomyces limnophilus strain DSM 3776, Planctopirus limnophila DSM 3776, Planctopirus limnophilus DSM 3776
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