Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Plim_0378PFAM: protein of unknown function DUF1549; Planctomycete cytochrome C; KEGG: pat:Patl_0815 hypothetical protein. (1067 aa)    
Predicted Functional Partners:
Plim_3983
Molybdopterin oxidoreductase, iron-sulfur binding subunit.
  
 
 0.853
Plim_3989
Cytochrome c oxidase, subunit II.
  
 
 0.845
Plim_2067
PFAM: NHL repeat containing protein; KEGG: sus:Acid_6565 NHL repeat-containing protein.
  
   0.790
Plim_0518
PFAM: protein of unknown function DUF1501; KEGG: sus:Acid_0975 hypothetical protein.
 
     0.789
Plim_4138
Protein of unknown function DUF1501.
 
     0.789
Plim_0335
PFAM: protein of unknown function DUF1501; KEGG: sus:Acid_6548 hypothetical protein.
  
     0.775
Plim_0776
PFAM: protein of unknown function DUF1501; KEGG: sus:Acid_1146 hypothetical protein.
  
     0.775
Plim_1525
PFAM: protein of unknown function DUF1501; KEGG: sus:Acid_6289 hypothetical protein.
  
     0.775
Plim_1738
PFAM: protein of unknown function DUF1501; KEGG: azo:azo2345 hypothetical protein.
  
     0.775
Plim_1795
PFAM: protein of unknown function DUF1501; KEGG: sus:Acid_6548 hypothetical protein.
  
     0.775
Your Current Organism:
Planctopirus limnophila
NCBI taxonomy Id: 521674
Other names: P. limnophila DSM 3776, Planctomyces limnophilus ATCC 43296, Planctomyces limnophilus DSM 3776, Planctomyces limnophilus str. DSM 3776, Planctomyces limnophilus strain DSM 3776, Planctopirus limnophila DSM 3776, Planctopirus limnophilus DSM 3776
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