Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Plim_0405Hypothetical protein. (370 aa)    
Predicted Functional Partners:
Plim_0403
Hypothetical protein.
       0.760
Plim_0404
Hypothetical protein; KEGG: mfa:Mfla_2522 methylation.
       0.760
Plim_0402
Hypothetical protein.
       0.753
Plim_0406
Hypothetical protein; KEGG: gme:Gmet_3367 general secretion pathway protein G.
       0.629
Plim_0407
PFAM: type II secretion system protein; KEGG: sfu:Sfum_0118 type II secretion system protein.
  
    0.544
Plim_0401
Hypothetical protein.
       0.505
Plim_0408
PFAM: type II secretion system protein E; General secretory system II protein E domain protein; SMART: AAA ATPase; KEGG: mxa:MXAN_5788 type IV-A pilus assembly ATPase PilB.
  
   0.458
Your Current Organism:
Planctopirus limnophila
NCBI taxonomy Id: 521674
Other names: P. limnophila DSM 3776, Planctomyces limnophilus ATCC 43296, Planctomyces limnophilus DSM 3776, Planctomyces limnophilus str. DSM 3776, Planctomyces limnophilus strain DSM 3776, Planctopirus limnophila DSM 3776, Planctopirus limnophilus DSM 3776
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