STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Plim_0406Hypothetical protein; KEGG: gme:Gmet_3367 general secretion pathway protein G. (352 aa)    
Predicted Functional Partners:
Plim_0407
PFAM: type II secretion system protein; KEGG: sfu:Sfum_0118 type II secretion system protein.
 
  
 0.874
Plim_0402
Hypothetical protein.
     
 0.830
Plim_0401
Hypothetical protein.
     
 0.767
Plim_2824
Protein of unknown function DUF1559.
  
     0.761
Plim_0377
PFAM: protein of unknown function DUF1559; KEGG: sus:Acid_5705 Tfp pilus assembly protein PilE- like protein.
  
     0.745
Plim_0160
PFAM: protein of unknown function DUF1559; KEGG: sus:Acid_5705 Tfp pilus assembly protein PilE- like protein.
  
     0.740
Plim_0027
PFAM: protein of unknown function DUF1559; KEGG: sus:Acid_5705 Tfp pilus assembly protein PilE- like protein.
  
     0.735
Plim_2417
PFAM: protein of unknown function DUF1559; KEGG: bam:Bamb_1440 type II secretion system protein G.
  
     0.719
Plim_0410
PFAM: type II secretion system protein E; General secretory system II protein E domain protein; SMART: AAA ATPase; KEGG: scl:sce4467 type IV pilus biogenesis protein PilB.
   
 
 0.712
Plim_2092
PFAM: protein of unknown function DUF1559; KEGG: sus:Acid_5705 Tfp pilus assembly protein PilE- like protein.
  
     0.705
Your Current Organism:
Planctopirus limnophila
NCBI taxonomy Id: 521674
Other names: P. limnophila DSM 3776, Planctomyces limnophilus ATCC 43296, Planctomyces limnophilus DSM 3776, Planctomyces limnophilus str. DSM 3776, Planctomyces limnophilus strain DSM 3776, Planctopirus limnophila DSM 3776, Planctopirus limnophilus DSM 3776
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