Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Plim_0408PFAM: type II secretion system protein E; General secretory system II protein E domain protein; SMART: AAA ATPase; KEGG: mxa:MXAN_5788 type IV-A pilus assembly ATPase PilB. (570 aa)    
Predicted Functional Partners:
Plim_0407
PFAM: type II secretion system protein; KEGG: sfu:Sfum_0118 type II secretion system protein.
 
 
 0.945
Plim_0156
PFAM: type II secretion system protein; KEGG: afw:Anae109_0728 general secretion pathway protein F.
  
   0.870
Plim_0425
PFAM: type II secretion system protein; KEGG: gur:Gura_2680 type II secretion system protein.
  
   0.870
Plim_1294
PFAM: type II secretion system protein; KEGG: ppr:PBPRA3279 putative MSHA biogenesis protein MshG.
  
   0.870
Plim_1574
PFAM: peptidase A24A domain protein; KEGG: aba:Acid345_1591 Type 4 prepilin peptidase 1. Aspartic peptidase. MEROPS family A24A.
 
 
 0.757
Plim_1841
PFAM: peptidase A24A domain protein; KEGG: afr:AFE_0186 type IV pilus prepilin peptidase PilD.
 
 
 0.733
Plim_0409
KEGG: twitching motility protein; K02669 twitching motility protein PilT; TIGRFAM: twitching motility protein; PFAM: type II secretion system protein E; SMART: AAA ATPase.
 
  
0.690
Plim_3389
Type II secretory pathway component PulF-like protein.
  
   0.671
Plim_3388
Type II secretion system protein.
  
   0.619
Plim_0406
Hypothetical protein; KEGG: gme:Gmet_3367 general secretion pathway protein G.
  
   0.507
Your Current Organism:
Planctopirus limnophila
NCBI taxonomy Id: 521674
Other names: P. limnophila DSM 3776, Planctomyces limnophilus ATCC 43296, Planctomyces limnophilus DSM 3776, Planctomyces limnophilus str. DSM 3776, Planctomyces limnophilus strain DSM 3776, Planctopirus limnophila DSM 3776, Planctopirus limnophilus DSM 3776
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