STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Plim_0426PFAM: type II secretion system protein E; General secretory system II protein E domain protein; KEGG: gsu:GSU1491 type IV pilus biogenesis protein PilB. (577 aa)    
Predicted Functional Partners:
Plim_0425
PFAM: type II secretion system protein; KEGG: gur:Gura_2680 type II secretion system protein.
   0.944
Plim_0156
PFAM: type II secretion system protein; KEGG: afw:Anae109_0728 general secretion pathway protein F.
 
   0.879
Plim_0407
PFAM: type II secretion system protein; KEGG: sfu:Sfum_0118 type II secretion system protein.
 
   0.879
Plim_1294
PFAM: type II secretion system protein; KEGG: ppr:PBPRA3279 putative MSHA biogenesis protein MshG.
  
   0.879
Plim_1574
PFAM: peptidase A24A domain protein; KEGG: aba:Acid345_1591 Type 4 prepilin peptidase 1. Aspartic peptidase. MEROPS family A24A.
 
 
 0.752
Plim_1841
PFAM: peptidase A24A domain protein; KEGG: afr:AFE_0186 type IV pilus prepilin peptidase PilD.
 
 
 0.703
Plim_0427
TIGRFAM: anti-anti-sigma factor; PFAM: Sulfate transporter/antisigma-factor antagonist STAS; KEGG: dal:Dalk_0884 anti-sigma-factor antagonist.
       0.672
Plim_3389
Type II secretory pathway component PulF-like protein.
  
   0.659
Plim_3388
Type II secretion system protein.
  
   0.627
Plim_3281
Type II and III secretion system protein; Belongs to the bacterial secretin family.
 
    0.496
Your Current Organism:
Planctopirus limnophila
NCBI taxonomy Id: 521674
Other names: P. limnophila DSM 3776, Planctomyces limnophilus ATCC 43296, Planctomyces limnophilus DSM 3776, Planctomyces limnophilus str. DSM 3776, Planctomyces limnophilus strain DSM 3776, Planctopirus limnophila DSM 3776, Planctopirus limnophilus DSM 3776
Server load: low (12%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.