STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Plim_0456SMART: Parallel beta-helix repeat; KEGG: bmj:BMULJ_04389 outer membrane autotransporter barrel. (2615 aa)    
Predicted Functional Partners:
Plim_3354
TPR repeat-containing protein.
  
     0.748
Plim_3875
Endonuclease/exonuclease/phosphatase; KEGG: hypothetical protein LOC100150481.
  
     0.703
Plim_1805
Hypothetical protein.
  
     0.632
Plim_3424
SCP-like extracellular.
   
    0.627
Plim_2378
KEGG: hypothetical protein.
  
     0.603
Plim_4071
Spermine synthase.
  
    0.587
Plim_3647
Hypothetical protein.
  
   
 0.572
Plim_2023
Hypothetical protein; KEGG: sat:SYN_00008 AAA family ATPase.
  
     0.562
Plim_2805
Outer membrane efflux protein.
  
     0.550
Plim_1306
PFAM: Forkhead-associated protein; KEGG: hypothetical protein; K03497 chromosome partitioning protein, ParB family.
 
   0.544
Your Current Organism:
Planctopirus limnophila
NCBI taxonomy Id: 521674
Other names: P. limnophila DSM 3776, Planctomyces limnophilus ATCC 43296, Planctomyces limnophilus DSM 3776, Planctomyces limnophilus str. DSM 3776, Planctomyces limnophilus strain DSM 3776, Planctopirus limnophila DSM 3776, Planctopirus limnophilus DSM 3776
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.