STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Plim_0469PFAM: protein of unknown function DUF214; KEGG: bid:Bind_2114 hypothetical protein. (386 aa)    
Predicted Functional Partners:
Plim_0471
PFAM: secretion protein HlyD family protein; biotin/lipoyl attachment domain-containing protein; KEGG: dvm:DvMF_1628 efflux transporter, RND family, MFP subunit.
 
  
 0.925
Plim_0470
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: met:M446_0166 ABC transporter related.
 
 
 0.918
Plim_1115
PFAM: secretion protein HlyD family protein; KEGG: met:M446_0165 secretion protein HlyD family protein.
 
  
 0.864
Plim_1116
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: bid:Bind_2113 ABC transporter related.
 
 
 0.848
Plim_1584
TIGRFAM: efflux transporter, RND family, MFP subunit; KEGG: dar:Daro_2627 secretion protein HlyD; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
  
 
 0.780
Plim_0468
PFAM: Transcriptional regulator TetR; regulatory protein TetR; KEGG: sfu:Sfum_3173 transcriptional regulator, TetR family.
     
 0.605
Plim_2370
KEGG: sus:Acid_5886 outer membrane efflux protein.
 
 
 
 0.560
Plim_0933
KEGG: acr:Acry_3027 heavy metal translocating P- type ATPase; TIGRFAM: heavy metal translocating P-type ATPase; ATPase, P-type (transporting), HAD superfamily, subfamily IC; PFAM: E1-E2 ATPase-associated domain protein; Haloacid dehalogenase domain protein hydrolase.
  
    0.523
Plim_3271
GCN5-related N-acetyltransferase.
  
     0.435
Plim_1036
AmoP; SMART: AMOP; KEGG: dal:Dalk_2288 YD repeat protein.
  
     0.422
Your Current Organism:
Planctopirus limnophila
NCBI taxonomy Id: 521674
Other names: P. limnophila DSM 3776, Planctomyces limnophilus ATCC 43296, Planctomyces limnophilus DSM 3776, Planctomyces limnophilus str. DSM 3776, Planctomyces limnophilus strain DSM 3776, Planctopirus limnophila DSM 3776, Planctopirus limnophilus DSM 3776
Server load: low (14%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.