Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Plim_0471PFAM: secretion protein HlyD family protein; biotin/lipoyl attachment domain-containing protein; KEGG: dvm:DvMF_1628 efflux transporter, RND family, MFP subunit. (414 aa)    
Predicted Functional Partners:
Plim_0470
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: met:M446_0166 ABC transporter related.
 
    0.930
Plim_0469
PFAM: protein of unknown function DUF214; KEGG: bid:Bind_2114 hypothetical protein.
 
  
 0.925
Plim_1117
PFAM: protein of unknown function DUF214; KEGG: bid:Bind_2114 hypothetical protein.
  
     0.774
Plim_1116
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: bid:Bind_2113 ABC transporter related.
 
    0.687
Plim_2370
KEGG: sus:Acid_5886 outer membrane efflux protein.
  
   0.576
Plim_2026
Toxin secretion ABC transporter ATP-binding protein; KEGG: mfa:Mfla_2223 ABC transporter related.
  
 
 0.567
Plim_3164
Protein of unknown function DUF214.
 
  
 0.567
Plim_0127
PFAM: protein of unknown function DUF214; KEGG: saz:Sama_1472 ABC transporter permease protein.
 
  
 0.563
Plim_0558
TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: scl:sce1627 RND family efflux transporter; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
  
     0.562
Plim_1582
PFAM: outer membrane efflux protein; KEGG: bpm:BURPS1710b_A0033 heavy metal resistance protein CzcC.
  
   0.487
Your Current Organism:
Planctopirus limnophila
NCBI taxonomy Id: 521674
Other names: P. limnophila DSM 3776, Planctomyces limnophilus ATCC 43296, Planctomyces limnophilus DSM 3776, Planctomyces limnophilus str. DSM 3776, Planctomyces limnophilus strain DSM 3776, Planctopirus limnophila DSM 3776, Planctopirus limnophilus DSM 3776
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