Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
Plim_0506PFAM: TROVE domain protein; KEGG: pfl:PFL_2303 60-kDa SS-A/Ro ribonucleoprotein. (542 aa)    
Predicted Functional Partners:
Plim_0655
PFAM: Pericardin like; KEGG: GI11778 gene product from transcript GI11778- RA.
  
     0.600
Plim_0507
KEGG: gur:Gura_1699 hypothetical protein.
       0.547
Plim_2711
Flagellar hook-associated protein 3.
  
     0.543
Plim_0509
KEGG: mxa:MXAN_7049 hypothetical protein.
  
     0.535
Plim_0504
Hypothetical protein; KEGG: GA28568 gene product from transcript GA28568- RA.
       0.524
Plim_0505
Hypothetical protein.
       0.524
Plim_2090
PFAM: protein of unknown function DUF1549; KEGG: sus:Acid_5709 hypothetical protein.
  
     0.481
Plim_0034
Biotin apo-protein ligase-related protein; KEGG: hypothetical protein.
  
     0.466
Plim_4136
Hypothetical protein.
  
     0.462
Plim_2527
Dipeptidyl aminopeptidase/acylaminoacyl- peptidase-like protein; KEGG: pmr:PMI1215 hypothetical protein.
  
     0.452
Your Current Organism:
Planctopirus limnophila
NCBI taxonomy Id: 521674
Other names: P. limnophila DSM 3776, Planctomyces limnophilus ATCC 43296, Planctomyces limnophilus DSM 3776, Planctomyces limnophilus str. DSM 3776, Planctomyces limnophilus strain DSM 3776, Planctopirus limnophila DSM 3776, Planctopirus limnophilus DSM 3776
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