Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Plim_0508TIGRFAM: RNA ligase, DRB0094 family; KEGG: hypothetical protein. (366 aa)    
Predicted Functional Partners:
pheS
TIGRFAM: phenylalanyl-tRNA synthetase, alpha subunit; PFAM: phenylalanyl-tRNA synthetase class IIc; aminoacyl tRNA synthetase class II domain protein; KEGG: shl:Shal_1812 phenylalanyl-tRNA synthetase subunit alpha; Belongs to the class-II aminoacyl-tRNA synthetase family. Phe-tRNA synthetase alpha subunit type 1 subfamily.
  
 
 0.903
Plim_0035
PFAM: N-formylglutamate amidohydrolase; KEGG: hypothetical gene supported by CR386744.
  
     0.744
Plim_2131
KEGG: nme:NMB1094 hypothetical protein.
  
     0.735
Plim_1194
PFAM: peptidase M41; KEGG: gur:Gura_0348 hypothetical protein.
 
     0.726
Plim_1668
KEGG: ade:Adeh_2066 hypothetical protein.
  
     0.712
Plim_1570
KEGG: hch:HCH_05019 hypothetical protein.
  
     0.689
Plim_4074
Protein of unknown function DUF1559.
  
     0.674
Plim_3818
Oxidoreductase domain protein; KEGG: hypothetical protein.
  
     0.596
Plim_2694
Glutamate synthase (NADH).
     
 0.473
Plim_2317
KEGG: net:Neut_1053 hypothetical protein.
  
     0.461
Your Current Organism:
Planctopirus limnophila
NCBI taxonomy Id: 521674
Other names: P. limnophila DSM 3776, Planctomyces limnophilus ATCC 43296, Planctomyces limnophilus DSM 3776, Planctomyces limnophilus str. DSM 3776, Planctomyces limnophilus strain DSM 3776, Planctopirus limnophila DSM 3776, Planctopirus limnophilus DSM 3776
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