STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
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[Homology]
Score
Plim_0524TIGRFAM: RNA polymerase sigma-70 factor; RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; Sigma-70 region 4 type 2; KEGG: ilo:IL2423 DNA-directed RNA polymerase specialized sigma factor; Belongs to the sigma-70 factor family. ECF subfamily. (202 aa)    
Predicted Functional Partners:
Plim_0777
Hypothetical protein; KEGG: sus:Acid_1077 alpha/beta hydrolase domain- containing protein.
  
     0.687
Plim_0525
PFAM: protein of unknown function DUF1549; KEGG: sus:Acid_5709 hypothetical protein.
 
     0.643
Plim_1449
KEGG: sus:Acid_5040 hypothetical protein.
  
     0.606
Plim_0523
PFAM: protein of unknown function DUF1501; KEGG: sus:Acid_3761 hypothetical protein.
 
     0.586
Plim_1450
PFAM: protein of unknown function DUF1549; KEGG: sus:Acid_5039 hypothetical protein.
  
     0.581
Plim_3151
Protein of unknown function DUF303 acetylesterase putative; KEGG: proteophosphoglycan 5.
  
     0.517
Plim_1459
KEGG: Hypothetical protein CBG02561.
  
     0.501
Plim_0522
PFAM: protein of unknown function DUF1549; KEGG: sus:Acid_5709 hypothetical protein.
 
     0.500
Plim_4048
Cycloartenol synthase-like protein.
  
     0.476
Plim_1448
PFAM: protein of unknown function DUF1501; KEGG: sus:Acid_5041 hypothetical protein.
  
     0.465
Your Current Organism:
Planctopirus limnophila
NCBI taxonomy Id: 521674
Other names: P. limnophila DSM 3776, Planctomyces limnophilus ATCC 43296, Planctomyces limnophilus DSM 3776, Planctomyces limnophilus str. DSM 3776, Planctomyces limnophilus strain DSM 3776, Planctopirus limnophila DSM 3776, Planctopirus limnophilus DSM 3776
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