STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Plim_0552PFAM: PfkB domain protein; KEGG: sus:Acid_3554 ribokinase-like domain- containing protein. (349 aa)    
Predicted Functional Partners:
Plim_1387
PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: sus:Acid_3556 hydrolase.
     0.974
Plim_0899
TIGRFAM: lipopolysaccharide heptosyltransferase II; PFAM: glycosyl transferase family 9; KEGG: glo:Glov_0772 lipopolysaccharide heptosyltransferase II.
 
   
 0.790
Plim_1528
KEGG: sus:Acid_2237 sugar isomerase (SIS).
 
   
 0.785
Plim_1964
PFAM: glycosyl transferase family 9; KEGG: sfu:Sfum_0375 lipopolysaccharide heptosyltransferase I.
 
   
 0.781
hldE
Cytidyltransferase-related domain protein; Catalyzes the ADP transfer from ATP to D-glycero-beta-D- manno-heptose 1-phosphate, yielding ADP-D-glycero-beta-D-manno-heptose. In the N-terminal section; belongs to the carbohydrate kinase PfkB family.
  
     0.745
Plim_0551
PFAM: Xylose isomerase domain protein TIM barrel; KEGG: sus:Acid_1577 xylose isomerase domain- containing protein.
 
     0.577
Plim_0553
Hypothetical protein.
       0.547
Plim_3243
Hypothetical protein.
  
     0.514
Plim_1862
PFAM: lipid A biosynthesis acyltransferase; KEGG: sfu:Sfum_0376 lipid A biosynthesis acyltransferase.
 
   
 0.456
Plim_0919
UDP-3-0-acyl N-acetylglucosamine deacetylase; Catalyzes the hydrolysis of UDP-3-O-myristoyl-N- acetylglucosamine to form UDP-3-O-myristoylglucosamine and acetate, the committed step in lipid A biosynthesis. Belongs to the LpxC family.
 
   
 0.438
Your Current Organism:
Planctopirus limnophila
NCBI taxonomy Id: 521674
Other names: P. limnophila DSM 3776, Planctomyces limnophilus ATCC 43296, Planctomyces limnophilus DSM 3776, Planctomyces limnophilus str. DSM 3776, Planctomyces limnophilus strain DSM 3776, Planctopirus limnophila DSM 3776, Planctopirus limnophilus DSM 3776
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