Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Plim_05644-amino-4-deoxy-L-arabinose transferase-like glycosyltransferase of PMT family; KEGG: afw:Anae109_0521 glycosyl transferase family protein. (671 aa)    
Predicted Functional Partners:
Plim_0432
PFAM: glycosyl transferase family 39; KEGG: afr:AFE_0276 dolichyl-phosphate-mannose- protein mannosyltransferase family protein.
  
     0.744
Plim_0565
KEGG: dal:Dalk_3719 hypothetical protein.
       0.476
Plim_0445
PFAM: glycosyl transferase family 2; KEGG: gme:Gmet_2892 glycosyl transferase family protein.
  
    0.475
Plim_3243
Hypothetical protein.
  
    0.449
Plim_1158
PFAM: glycosyl transferase family 2; KEGG: dol:Dole_1442 glycosyl transferase family protein.
  
    0.435
Plim_1029
KEGG: bba:Bd2942 hypothetical protein.
 
    0.410
Plim_1055
PFAM: glycosyl transferase family 2; Methyltransferase type 12; Methyltransferase type 11; TPR repeat-containing protein; Methionine biosynthesis MetW protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: gbm:Gbem_3740 glycosyl transferase family 2.
  
  
 0.401
Your Current Organism:
Planctopirus limnophila
NCBI taxonomy Id: 521674
Other names: P. limnophila DSM 3776, Planctomyces limnophilus ATCC 43296, Planctomyces limnophilus DSM 3776, Planctomyces limnophilus str. DSM 3776, Planctomyces limnophilus strain DSM 3776, Planctopirus limnophila DSM 3776, Planctopirus limnophilus DSM 3776
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