STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Plim_0599PFAM: iron-containing alcohol dehydrogenase; KEGG: tcx:Tcr_0211 iron-containing alcohol dehydrogenase. (393 aa)    
Predicted Functional Partners:
Plim_1751
PFAM: Aldehyde Dehydrogenase; KEGG: sus:Acid_1333 aldehyde dehydrogenase.
 
 0.941
Plim_1903
TIGRFAM: phosphonate catabolism associated alcohol dehydrogenase; PFAM: Alcohol dehydrogenase GroES domain protein; Alcohol dehydrogenase zinc-binding domain protein; KEGG: similar to predicted protein.
  
 
 0.719
Plim_2975
Alcohol dehydrogenase GroES domain protein.
  
 
 0.719
glgA
Glycogen/starch synthase, ADP-glucose type; Synthesizes alpha-1,4-glucan chains using ADP-glucose.
   
    0.682
Plim_0600
TIGRFAM: SpoIID/LytB domain protein; PFAM: Stage II sporulation D domain protein; KEGG: mxa:MXAN_4695 SpoIID/LytB domain protein.
       0.603
pckA
Phosphoenolpyruvate carboxykinase (ATP); Involved in the gluconeogenesis. Catalyzes the conversion of oxaloacetate (OAA) to phosphoenolpyruvate (PEP) through direct phosphoryl transfer between the nucleoside triphosphate and OAA.
   
  
 0.566
Plim_0598
PFAM: Pyrrolo-quinoline quinone; SMART: Pyrrolo-quinoline quinone; KEGG: son:SO_3309 outer membrane protein assembly complex subunit YfgL.
       0.465
guaA
GMP synthase, large subunit; Catalyzes the synthesis of GMP from XMP.
     
 0.458
Plim_0597
Lysine--tRNA ligase; PFAM: tRNA synthetase class II (D K and N); KEGG: pmu:PM0202 lysyl-tRNA synthetase.
       0.452
Plim_0601
Hypothetical protein.
       0.450
Your Current Organism:
Planctopirus limnophila
NCBI taxonomy Id: 521674
Other names: P. limnophila DSM 3776, Planctomyces limnophilus ATCC 43296, Planctomyces limnophilus DSM 3776, Planctomyces limnophilus str. DSM 3776, Planctomyces limnophilus strain DSM 3776, Planctopirus limnophila DSM 3776, Planctopirus limnophilus DSM 3776
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