STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Plim_0607Hypothetical protein; KEGG: GJ15014 gene product from transcript GJ15014- RA. (548 aa)    
Predicted Functional Partners:
Plim_1581
PFAM: PA14 domain protein; SMART: PA14 domain protein; KEGG: rde:RD1_3724 hypothetical protein.
  
     0.712
Plim_2943
Pyrrolo-quinoline quinone.
  
     0.677
Plim_1806
Hypothetical protein; KEGG: sushi-domain containing secreted protein; with a signal peptide, low complexity region followed by a sushi domain.
  
     0.661
Plim_0598
PFAM: Pyrrolo-quinoline quinone; SMART: Pyrrolo-quinoline quinone; KEGG: son:SO_3309 outer membrane protein assembly complex subunit YfgL.
  
     0.658
Plim_4240
Pyrrolo-quinoline quinone.
  
     0.655
Plim_3330
Major facilitator superfamily MFS_1.
  
     0.642
Plim_1415
TIGRFAM: conserved hypothetical protein; PFAM: protein of unknown function DUF1550; KEGG: acp:A2cp1_4421 hypothetical protein.
  
     0.638
Plim_1863
SMART: Pyrrolo-quinoline quinone; KEGG: pla:Plav_3493 pyrrolo-quinoline quinone.
  
     0.636
Plim_2944
Pyrrolo-quinoline quinone.
  
     0.636
Plim_4083
Protein of unknown function DUF1559.
  
     0.623
Your Current Organism:
Planctopirus limnophila
NCBI taxonomy Id: 521674
Other names: P. limnophila DSM 3776, Planctomyces limnophilus ATCC 43296, Planctomyces limnophilus DSM 3776, Planctomyces limnophilus str. DSM 3776, Planctomyces limnophilus strain DSM 3776, Planctopirus limnophila DSM 3776, Planctopirus limnophilus DSM 3776
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.